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Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly
Evidence shows that biotic and abiotic factors have apparent diversity at different forest ages, leading to changes in rhizosphere microbiomes. However, the difference in diversity, co-occurrence pattern, and assembly of the rhizosphere microbial community among the different forest ages is still un...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10458523/ https://www.ncbi.nlm.nih.gov/pubmed/37630654 http://dx.doi.org/10.3390/microorganisms11082094 |
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author | Chen, Qian Li, Dengwu Luo, Na Yang, Jinyan |
author_facet | Chen, Qian Li, Dengwu Luo, Na Yang, Jinyan |
author_sort | Chen, Qian |
collection | PubMed |
description | Evidence shows that biotic and abiotic factors have apparent diversity at different forest ages, leading to changes in rhizosphere microbiomes. However, the difference in diversity, co-occurrence pattern, and assembly of the rhizosphere microbial community among the different forest ages is still unclear. A total of 24 Juniperus przewalskii rhizosphere soil samples were selected from four representative age classes, using diameter at breast height (DBH) as a proxy for tree age (age class I: 5 < DBH ≤ 12.5 cm, age class II: 12.5 < DBH ≤ 22.5 cm, age class III: 22.5 < DBH ≤ 32.5 cm, and age class IV: DBH > 32.5 cm), and analyzed the structural characteristics of the soil microbial community by high-throughput amplicon sequencing. With the increase in age class, the microbial community α-diversity and β-diversity had an increased trend. The bacterial Shannon index in class II and class III were markedly higher than in class I. From class I to class IV, the relative abundances of dominant phyla such as Actinobacteria and Ascomycota decreased, and the relative abundances of Proteobacteria and Basidiomycota increased in contrast. The complexity and association stability of the bacteria and fungi community network structure increase with forest age. Stochastic processes mediated the assembly of soil bacterial communities, while deterministic processes played a more significant role in the assembly of fungal communities. In addition, the relative importance of deterministic components in the microbial community increased significantly with age class. Random forests suggested that soil pH, plant Shannon–Wiener index (H), and Pielou’s evenness index (J) were the most important driving factors of bacterial and fungal community assembly. Overall, these results provide information useful for understanding the generation and maintenance mechanisms of rhizosphere microbial communities across age classes. |
format | Online Article Text |
id | pubmed-10458523 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104585232023-08-27 Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly Chen, Qian Li, Dengwu Luo, Na Yang, Jinyan Microorganisms Article Evidence shows that biotic and abiotic factors have apparent diversity at different forest ages, leading to changes in rhizosphere microbiomes. However, the difference in diversity, co-occurrence pattern, and assembly of the rhizosphere microbial community among the different forest ages is still unclear. A total of 24 Juniperus przewalskii rhizosphere soil samples were selected from four representative age classes, using diameter at breast height (DBH) as a proxy for tree age (age class I: 5 < DBH ≤ 12.5 cm, age class II: 12.5 < DBH ≤ 22.5 cm, age class III: 22.5 < DBH ≤ 32.5 cm, and age class IV: DBH > 32.5 cm), and analyzed the structural characteristics of the soil microbial community by high-throughput amplicon sequencing. With the increase in age class, the microbial community α-diversity and β-diversity had an increased trend. The bacterial Shannon index in class II and class III were markedly higher than in class I. From class I to class IV, the relative abundances of dominant phyla such as Actinobacteria and Ascomycota decreased, and the relative abundances of Proteobacteria and Basidiomycota increased in contrast. The complexity and association stability of the bacteria and fungi community network structure increase with forest age. Stochastic processes mediated the assembly of soil bacterial communities, while deterministic processes played a more significant role in the assembly of fungal communities. In addition, the relative importance of deterministic components in the microbial community increased significantly with age class. Random forests suggested that soil pH, plant Shannon–Wiener index (H), and Pielou’s evenness index (J) were the most important driving factors of bacterial and fungal community assembly. Overall, these results provide information useful for understanding the generation and maintenance mechanisms of rhizosphere microbial communities across age classes. MDPI 2023-08-16 /pmc/articles/PMC10458523/ /pubmed/37630654 http://dx.doi.org/10.3390/microorganisms11082094 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chen, Qian Li, Dengwu Luo, Na Yang, Jinyan Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title | Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title_full | Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title_fullStr | Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title_full_unstemmed | Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title_short | Differences in Juniperus przewalskii Rhizosphere Microbiomes across Age Classes: Community Diversity and Assembly |
title_sort | differences in juniperus przewalskii rhizosphere microbiomes across age classes: community diversity and assembly |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10458523/ https://www.ncbi.nlm.nih.gov/pubmed/37630654 http://dx.doi.org/10.3390/microorganisms11082094 |
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