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International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives

Acinetobacter baumannii is a Gram-negative coccobacillus with exceptional survival skills in an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it one of the most successful hospital pathogens worldwide, representing a serious threat to public health. The glo...

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Autores principales: Shelenkov, Andrey, Akimkin, Vasiliy, Mikhaylova, Yulia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459012/
https://www.ncbi.nlm.nih.gov/pubmed/37630675
http://dx.doi.org/10.3390/microorganisms11082115
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author Shelenkov, Andrey
Akimkin, Vasiliy
Mikhaylova, Yulia
author_facet Shelenkov, Andrey
Akimkin, Vasiliy
Mikhaylova, Yulia
author_sort Shelenkov, Andrey
collection PubMed
description Acinetobacter baumannii is a Gram-negative coccobacillus with exceptional survival skills in an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it one of the most successful hospital pathogens worldwide, representing a serious threat to public health. The global dissemination of A. baumannii is driven by several lineages named ‘international clones of high risk’ (ICs), two of which were first revealed in the 1970s. Epidemiological surveillance is a crucial tool for controlling the spread of this pathogen, which currently increasingly involves whole genome sequencing. However, the assignment of a particular A. baumannii isolate to some IC based on its genomic sequence is not always straightforward and requires some computational skills from researchers, while the definitions found in the literature are sometimes controversial. In this review, we will focus on A. baumannii typing tools suitable for IC determination, provide data to easily determine IC assignment based on MLST sequence type (ST) and intrinsic bla(OXA-51)(-like) gene variants, discuss the history and current spread data of nine known ICs, IC1-IC9, and investigate the representation of ICs in public databases. MLST and cgMLST profiles, as well as OXA-51-like presence data are provided for all isolates available in GenBank. The possible emergence of a novel A. baumannii international clone, IC10, will be discussed.
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spelling pubmed-104590122023-08-27 International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives Shelenkov, Andrey Akimkin, Vasiliy Mikhaylova, Yulia Microorganisms Review Acinetobacter baumannii is a Gram-negative coccobacillus with exceptional survival skills in an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it one of the most successful hospital pathogens worldwide, representing a serious threat to public health. The global dissemination of A. baumannii is driven by several lineages named ‘international clones of high risk’ (ICs), two of which were first revealed in the 1970s. Epidemiological surveillance is a crucial tool for controlling the spread of this pathogen, which currently increasingly involves whole genome sequencing. However, the assignment of a particular A. baumannii isolate to some IC based on its genomic sequence is not always straightforward and requires some computational skills from researchers, while the definitions found in the literature are sometimes controversial. In this review, we will focus on A. baumannii typing tools suitable for IC determination, provide data to easily determine IC assignment based on MLST sequence type (ST) and intrinsic bla(OXA-51)(-like) gene variants, discuss the history and current spread data of nine known ICs, IC1-IC9, and investigate the representation of ICs in public databases. MLST and cgMLST profiles, as well as OXA-51-like presence data are provided for all isolates available in GenBank. The possible emergence of a novel A. baumannii international clone, IC10, will be discussed. MDPI 2023-08-19 /pmc/articles/PMC10459012/ /pubmed/37630675 http://dx.doi.org/10.3390/microorganisms11082115 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Shelenkov, Andrey
Akimkin, Vasiliy
Mikhaylova, Yulia
International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title_full International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title_fullStr International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title_full_unstemmed International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title_short International Clones of High Risk of Acinetobacter Baumannii—Definitions, History, Properties and Perspectives
title_sort international clones of high risk of acinetobacter baumannii—definitions, history, properties and perspectives
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459012/
https://www.ncbi.nlm.nih.gov/pubmed/37630675
http://dx.doi.org/10.3390/microorganisms11082115
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