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Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins

Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east...

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Detalles Bibliográficos
Autores principales: Pushkareva, Ekaterina, Elster, Josef, Becker, Burkhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459675/
https://www.ncbi.nlm.nih.gov/pubmed/37630492
http://dx.doi.org/10.3390/microorganisms11081932
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author Pushkareva, Ekaterina
Elster, Josef
Becker, Burkhard
author_facet Pushkareva, Ekaterina
Elster, Josef
Becker, Burkhard
author_sort Pushkareva, Ekaterina
collection PubMed
description Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria.
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spelling pubmed-104596752023-08-27 Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins Pushkareva, Ekaterina Elster, Josef Becker, Burkhard Microorganisms Communication Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria. MDPI 2023-07-28 /pmc/articles/PMC10459675/ /pubmed/37630492 http://dx.doi.org/10.3390/microorganisms11081932 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Pushkareva, Ekaterina
Elster, Josef
Becker, Burkhard
Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title_full Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title_fullStr Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title_full_unstemmed Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title_short Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
title_sort metagenomic analysis of antarctic biocrusts unveils a rich range of cold-shock proteins
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459675/
https://www.ncbi.nlm.nih.gov/pubmed/37630492
http://dx.doi.org/10.3390/microorganisms11081932
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