Cargando…
Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins
Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459675/ https://www.ncbi.nlm.nih.gov/pubmed/37630492 http://dx.doi.org/10.3390/microorganisms11081932 |
_version_ | 1785097468757671936 |
---|---|
author | Pushkareva, Ekaterina Elster, Josef Becker, Burkhard |
author_facet | Pushkareva, Ekaterina Elster, Josef Becker, Burkhard |
author_sort | Pushkareva, Ekaterina |
collection | PubMed |
description | Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria. |
format | Online Article Text |
id | pubmed-10459675 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104596752023-08-27 Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins Pushkareva, Ekaterina Elster, Josef Becker, Burkhard Microorganisms Communication Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria. MDPI 2023-07-28 /pmc/articles/PMC10459675/ /pubmed/37630492 http://dx.doi.org/10.3390/microorganisms11081932 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Communication Pushkareva, Ekaterina Elster, Josef Becker, Burkhard Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title | Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title_full | Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title_fullStr | Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title_full_unstemmed | Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title_short | Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins |
title_sort | metagenomic analysis of antarctic biocrusts unveils a rich range of cold-shock proteins |
topic | Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459675/ https://www.ncbi.nlm.nih.gov/pubmed/37630492 http://dx.doi.org/10.3390/microorganisms11081932 |
work_keys_str_mv | AT pushkarevaekaterina metagenomicanalysisofantarcticbiocrustsunveilsarichrangeofcoldshockproteins AT elsterjosef metagenomicanalysisofantarcticbiocrustsunveilsarichrangeofcoldshockproteins AT beckerburkhard metagenomicanalysisofantarcticbiocrustsunveilsarichrangeofcoldshockproteins |