Cargando…
Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459691/ https://www.ncbi.nlm.nih.gov/pubmed/37631135 http://dx.doi.org/10.3390/plants12162923 |
_version_ | 1785097472638451712 |
---|---|
author | Zaynab, Madiha Sharif, Yasir Xu, Zhaoshi Fiaz, Sajid Al-Yahyai, Rashid Yadikar, Hamad. A. Al Kashgry, Najla Amin T. Qari, Sameer H. Sadder, Monther Li, Shuangfei |
author_facet | Zaynab, Madiha Sharif, Yasir Xu, Zhaoshi Fiaz, Sajid Al-Yahyai, Rashid Yadikar, Hamad. A. Al Kashgry, Najla Amin T. Qari, Sameer H. Sadder, Monther Li, Shuangfei |
author_sort | Zaynab, Madiha |
collection | PubMed |
description | The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group III). Interestingly, gene structure analysis illustrated that several GmDUF668 genes were without introns. Furthermore, the subcellular localization results suggested that GmDUF668 proteins were present in the nucleus, mitochondria, cytoplasm, and plasma membrane. GmDUF668 promoters were analyzed in silico to gain insight into the presence of regulatory sequences for TFs binding. The expression profiling illustrated that GmDUF668 genes showed expression in leaves, roots, nodules, and flowers. To investigate their response to salt stress, we utilized the RNA sequencing data of GmDUF668 genes. The results unveiled that GmDUF668-8, GmDUF668-20, and GmDUF668-30 genes were upregulated against salt stress treatment. We further validated these findings using qRT-PCR analysis. These findings provide a scientific basis to explore the functions of GmDUF668 genes against different stress conditions. |
format | Online Article Text |
id | pubmed-10459691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104596912023-08-27 Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress Zaynab, Madiha Sharif, Yasir Xu, Zhaoshi Fiaz, Sajid Al-Yahyai, Rashid Yadikar, Hamad. A. Al Kashgry, Najla Amin T. Qari, Sameer H. Sadder, Monther Li, Shuangfei Plants (Basel) Article The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group III). Interestingly, gene structure analysis illustrated that several GmDUF668 genes were without introns. Furthermore, the subcellular localization results suggested that GmDUF668 proteins were present in the nucleus, mitochondria, cytoplasm, and plasma membrane. GmDUF668 promoters were analyzed in silico to gain insight into the presence of regulatory sequences for TFs binding. The expression profiling illustrated that GmDUF668 genes showed expression in leaves, roots, nodules, and flowers. To investigate their response to salt stress, we utilized the RNA sequencing data of GmDUF668 genes. The results unveiled that GmDUF668-8, GmDUF668-20, and GmDUF668-30 genes were upregulated against salt stress treatment. We further validated these findings using qRT-PCR analysis. These findings provide a scientific basis to explore the functions of GmDUF668 genes against different stress conditions. MDPI 2023-08-11 /pmc/articles/PMC10459691/ /pubmed/37631135 http://dx.doi.org/10.3390/plants12162923 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zaynab, Madiha Sharif, Yasir Xu, Zhaoshi Fiaz, Sajid Al-Yahyai, Rashid Yadikar, Hamad. A. Al Kashgry, Najla Amin T. Qari, Sameer H. Sadder, Monther Li, Shuangfei Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title | Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title_full | Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title_fullStr | Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title_full_unstemmed | Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title_short | Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress |
title_sort | genome-wide analysis and expression profiling of duf668 genes in glycine max under salt stress |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459691/ https://www.ncbi.nlm.nih.gov/pubmed/37631135 http://dx.doi.org/10.3390/plants12162923 |
work_keys_str_mv | AT zaynabmadiha genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT sharifyasir genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT xuzhaoshi genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT fiazsajid genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT alyahyairashid genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT yadikarhamada genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT alkashgrynajlaamint genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT qarisameerh genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT saddermonther genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress AT lishuangfei genomewideanalysisandexpressionprofilingofduf668genesinglycinemaxundersaltstress |