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Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress

The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group...

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Autores principales: Zaynab, Madiha, Sharif, Yasir, Xu, Zhaoshi, Fiaz, Sajid, Al-Yahyai, Rashid, Yadikar, Hamad. A., Al Kashgry, Najla Amin T., Qari, Sameer H., Sadder, Monther, Li, Shuangfei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459691/
https://www.ncbi.nlm.nih.gov/pubmed/37631135
http://dx.doi.org/10.3390/plants12162923
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author Zaynab, Madiha
Sharif, Yasir
Xu, Zhaoshi
Fiaz, Sajid
Al-Yahyai, Rashid
Yadikar, Hamad. A.
Al Kashgry, Najla Amin T.
Qari, Sameer H.
Sadder, Monther
Li, Shuangfei
author_facet Zaynab, Madiha
Sharif, Yasir
Xu, Zhaoshi
Fiaz, Sajid
Al-Yahyai, Rashid
Yadikar, Hamad. A.
Al Kashgry, Najla Amin T.
Qari, Sameer H.
Sadder, Monther
Li, Shuangfei
author_sort Zaynab, Madiha
collection PubMed
description The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group III). Interestingly, gene structure analysis illustrated that several GmDUF668 genes were without introns. Furthermore, the subcellular localization results suggested that GmDUF668 proteins were present in the nucleus, mitochondria, cytoplasm, and plasma membrane. GmDUF668 promoters were analyzed in silico to gain insight into the presence of regulatory sequences for TFs binding. The expression profiling illustrated that GmDUF668 genes showed expression in leaves, roots, nodules, and flowers. To investigate their response to salt stress, we utilized the RNA sequencing data of GmDUF668 genes. The results unveiled that GmDUF668-8, GmDUF668-20, and GmDUF668-30 genes were upregulated against salt stress treatment. We further validated these findings using qRT-PCR analysis. These findings provide a scientific basis to explore the functions of GmDUF668 genes against different stress conditions.
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spelling pubmed-104596912023-08-27 Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress Zaynab, Madiha Sharif, Yasir Xu, Zhaoshi Fiaz, Sajid Al-Yahyai, Rashid Yadikar, Hamad. A. Al Kashgry, Najla Amin T. Qari, Sameer H. Sadder, Monther Li, Shuangfei Plants (Basel) Article The DUF668 gene performs a critical role in mitigating the impact of abiotic stress factors. In this study, we identified 30 DUF668 genes in a soybean genome, distributed across fifteen chromosomes. The phylogenetic analysis classified the DUF668 genes into three groups (group I, group II, and group III). Interestingly, gene structure analysis illustrated that several GmDUF668 genes were without introns. Furthermore, the subcellular localization results suggested that GmDUF668 proteins were present in the nucleus, mitochondria, cytoplasm, and plasma membrane. GmDUF668 promoters were analyzed in silico to gain insight into the presence of regulatory sequences for TFs binding. The expression profiling illustrated that GmDUF668 genes showed expression in leaves, roots, nodules, and flowers. To investigate their response to salt stress, we utilized the RNA sequencing data of GmDUF668 genes. The results unveiled that GmDUF668-8, GmDUF668-20, and GmDUF668-30 genes were upregulated against salt stress treatment. We further validated these findings using qRT-PCR analysis. These findings provide a scientific basis to explore the functions of GmDUF668 genes against different stress conditions. MDPI 2023-08-11 /pmc/articles/PMC10459691/ /pubmed/37631135 http://dx.doi.org/10.3390/plants12162923 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zaynab, Madiha
Sharif, Yasir
Xu, Zhaoshi
Fiaz, Sajid
Al-Yahyai, Rashid
Yadikar, Hamad. A.
Al Kashgry, Najla Amin T.
Qari, Sameer H.
Sadder, Monther
Li, Shuangfei
Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title_full Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title_fullStr Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title_full_unstemmed Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title_short Genome-Wide Analysis and Expression Profiling of DUF668 Genes in Glycine max under Salt Stress
title_sort genome-wide analysis and expression profiling of duf668 genes in glycine max under salt stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10459691/
https://www.ncbi.nlm.nih.gov/pubmed/37631135
http://dx.doi.org/10.3390/plants12162923
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