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A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase

ADP‐glucose pyrophosphorylase is a key regulatory enzyme involved in starch and glycogen synthesis in plants and bacteria, respectively. It has been hypothesized that inter‐subunit communications are important for the allosteric effect in this enzyme. However, no specific interactions have been iden...

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Autores principales: Patel, Hiral P., Martinez‐Ramirez, Gabriela, Dobrzynski, Emily, Iglesias, Alberto A., Liu, Dali, Ballicora, Miguel A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461462/
https://www.ncbi.nlm.nih.gov/pubmed/37551561
http://dx.doi.org/10.1002/pro.4747
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author Patel, Hiral P.
Martinez‐Ramirez, Gabriela
Dobrzynski, Emily
Iglesias, Alberto A.
Liu, Dali
Ballicora, Miguel A.
author_facet Patel, Hiral P.
Martinez‐Ramirez, Gabriela
Dobrzynski, Emily
Iglesias, Alberto A.
Liu, Dali
Ballicora, Miguel A.
author_sort Patel, Hiral P.
collection PubMed
description ADP‐glucose pyrophosphorylase is a key regulatory enzyme involved in starch and glycogen synthesis in plants and bacteria, respectively. It has been hypothesized that inter‐subunit communications are important for the allosteric effect in this enzyme. However, no specific interactions have been identified as part of the regulatory signal. The enzyme from Agrobacterium tumefaciens is a homotetramer allosterically regulated by fructose 6‐phosphate and pyruvate. Three pairs of distinct subunit‐subunit interfaces are present. Here we focus on an interface that features two symmetrical interactions between Arg11 and Asp141 from one subunit with residues Asp141 and Arg11 of the neighbor subunit, respectively. Previously, scanning mutagenesis showed that a mutation at the Arg11 position disrupted the activation of the enzyme. Considering the distance of these residues from the allosteric and catalytic sites, we hypothesized that the interaction between Arg11 and Asp141 is critical for allosteric signaling rather than effector binding. To prove our hypothesis, we mutated those two sites (D141A, D141E, D141N, D141R, R11D, and R11K) and performed kinetic and binding analysis. Mutations that altered the charge affected the regulation the most. To prove that the interaction per se (rather than the presence of specific residues) is critical, we partially rescued the R11D protein by introducing a second mutation (R11D/D141R). This could not restore the activator effect on k (cat), but it did rescue the effect on substrate affinity. Our results indicate the critical functional role of Arg11 and Asp141 to relay the allosteric signal in this subunit interface.
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spelling pubmed-104614622023-09-01 A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase Patel, Hiral P. Martinez‐Ramirez, Gabriela Dobrzynski, Emily Iglesias, Alberto A. Liu, Dali Ballicora, Miguel A. Protein Sci Research Articles ADP‐glucose pyrophosphorylase is a key regulatory enzyme involved in starch and glycogen synthesis in plants and bacteria, respectively. It has been hypothesized that inter‐subunit communications are important for the allosteric effect in this enzyme. However, no specific interactions have been identified as part of the regulatory signal. The enzyme from Agrobacterium tumefaciens is a homotetramer allosterically regulated by fructose 6‐phosphate and pyruvate. Three pairs of distinct subunit‐subunit interfaces are present. Here we focus on an interface that features two symmetrical interactions between Arg11 and Asp141 from one subunit with residues Asp141 and Arg11 of the neighbor subunit, respectively. Previously, scanning mutagenesis showed that a mutation at the Arg11 position disrupted the activation of the enzyme. Considering the distance of these residues from the allosteric and catalytic sites, we hypothesized that the interaction between Arg11 and Asp141 is critical for allosteric signaling rather than effector binding. To prove our hypothesis, we mutated those two sites (D141A, D141E, D141N, D141R, R11D, and R11K) and performed kinetic and binding analysis. Mutations that altered the charge affected the regulation the most. To prove that the interaction per se (rather than the presence of specific residues) is critical, we partially rescued the R11D protein by introducing a second mutation (R11D/D141R). This could not restore the activator effect on k (cat), but it did rescue the effect on substrate affinity. Our results indicate the critical functional role of Arg11 and Asp141 to relay the allosteric signal in this subunit interface. John Wiley & Sons, Inc. 2023-09-01 /pmc/articles/PMC10461462/ /pubmed/37551561 http://dx.doi.org/10.1002/pro.4747 Text en © 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Patel, Hiral P.
Martinez‐Ramirez, Gabriela
Dobrzynski, Emily
Iglesias, Alberto A.
Liu, Dali
Ballicora, Miguel A.
A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title_full A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title_fullStr A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title_full_unstemmed A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title_short A critical inter‐subunit interaction for the transmission of the allosteric signal in the Agrobacterium tumefaciens ADP‐glucose pyrophosphorylase
title_sort critical inter‐subunit interaction for the transmission of the allosteric signal in the agrobacterium tumefaciens adp‐glucose pyrophosphorylase
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461462/
https://www.ncbi.nlm.nih.gov/pubmed/37551561
http://dx.doi.org/10.1002/pro.4747
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