Cargando…
Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae)
Smallanthus sonchifolius (Asteraceae), is an important food plant in the world. There is no systematic report on the chloroplast genome of S. sonchifolius. Here we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 152,301 bp in length, had a...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461496/ https://www.ncbi.nlm.nih.gov/pubmed/37645475 http://dx.doi.org/10.1080/23802359.2023.2248683 |
_version_ | 1785097851358937088 |
---|---|
author | Yin, Juan Wang, Zhen Ma, Guihua Liu, Wenjing |
author_facet | Yin, Juan Wang, Zhen Ma, Guihua Liu, Wenjing |
author_sort | Yin, Juan |
collection | PubMed |
description | Smallanthus sonchifolius (Asteraceae), is an important food plant in the world. There is no systematic report on the chloroplast genome of S. sonchifolius. Here we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 152,301 bp in length, had a GC content of 37.55%, and encoded 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis showed that the tribe Millerieae and the tribe Madieae are closely related in the Asteraceae family. In the tribe Millerieae, Smallanthus was more closely related to Guizotia and Sigesbeckia. This chloroplast genome not only enriches the genome information of Smallanthus, but also lays the foundation for understanding the phylogeny within the genus Smallanthus. |
format | Online Article Text |
id | pubmed-10461496 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-104614962023-08-29 Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) Yin, Juan Wang, Zhen Ma, Guihua Liu, Wenjing Mitochondrial DNA B Resour Plastome Announcement Smallanthus sonchifolius (Asteraceae), is an important food plant in the world. There is no systematic report on the chloroplast genome of S. sonchifolius. Here we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 152,301 bp in length, had a GC content of 37.55%, and encoded 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis showed that the tribe Millerieae and the tribe Madieae are closely related in the Asteraceae family. In the tribe Millerieae, Smallanthus was more closely related to Guizotia and Sigesbeckia. This chloroplast genome not only enriches the genome information of Smallanthus, but also lays the foundation for understanding the phylogeny within the genus Smallanthus. Taylor & Francis 2023-08-25 /pmc/articles/PMC10461496/ /pubmed/37645475 http://dx.doi.org/10.1080/23802359.2023.2248683 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Announcement Yin, Juan Wang, Zhen Ma, Guihua Liu, Wenjing Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title | Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title_full | Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title_fullStr | Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title_full_unstemmed | Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title_short | Complete chloroplast genome and phylogenetic analysis of Smallanthus sonchifolius (Asteraceae) |
title_sort | complete chloroplast genome and phylogenetic analysis of smallanthus sonchifolius (asteraceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461496/ https://www.ncbi.nlm.nih.gov/pubmed/37645475 http://dx.doi.org/10.1080/23802359.2023.2248683 |
work_keys_str_mv | AT yinjuan completechloroplastgenomeandphylogeneticanalysisofsmallanthussonchifoliusasteraceae AT wangzhen completechloroplastgenomeandphylogeneticanalysisofsmallanthussonchifoliusasteraceae AT maguihua completechloroplastgenomeandphylogeneticanalysisofsmallanthussonchifoliusasteraceae AT liuwenjing completechloroplastgenomeandphylogeneticanalysisofsmallanthussonchifoliusasteraceae |