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NEAL: an open-source tool for audio annotation

Passive acoustic monitoring is used widely in ecology, biodiversity, and conservation studies. Data sets collected via acoustic monitoring are often extremely large and built to be processed automatically using artificial intelligence and machine learning models, which aim to replicate the work of d...

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Autores principales: Gibbons, Anthony, Donohue, Ian, Gorman, Courtney, King, Emma, Parnell, Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461540/
https://www.ncbi.nlm.nih.gov/pubmed/37645015
http://dx.doi.org/10.7717/peerj.15913
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author Gibbons, Anthony
Donohue, Ian
Gorman, Courtney
King, Emma
Parnell, Andrew
author_facet Gibbons, Anthony
Donohue, Ian
Gorman, Courtney
King, Emma
Parnell, Andrew
author_sort Gibbons, Anthony
collection PubMed
description Passive acoustic monitoring is used widely in ecology, biodiversity, and conservation studies. Data sets collected via acoustic monitoring are often extremely large and built to be processed automatically using artificial intelligence and machine learning models, which aim to replicate the work of domain experts. These models, being supervised learning algorithms, need to be trained on high quality annotations produced by experts. Since the experts are often resource-limited, a cost-effective process for annotating audio is needed to get maximal use out of the data. We present an open-source interactive audio data annotation tool, NEAL (Nature+Energy Audio Labeller). Built using R and the associated Shiny framework, the tool provides a reactive environment where users can quickly annotate audio files and adjust settings that automatically change the corresponding elements of the user interface. The app has been designed with the goal of having both expert birders and citizen scientists contribute to acoustic annotation projects. The popularity and flexibility of R programming in bioacoustics means that the Shiny app can be modified for other bird labelling data sets, or even to generic audio labelling tasks. We demonstrate the app by labelling data collected from wind farm sites across Ireland.
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spelling pubmed-104615402023-08-29 NEAL: an open-source tool for audio annotation Gibbons, Anthony Donohue, Ian Gorman, Courtney King, Emma Parnell, Andrew PeerJ Bioinformatics Passive acoustic monitoring is used widely in ecology, biodiversity, and conservation studies. Data sets collected via acoustic monitoring are often extremely large and built to be processed automatically using artificial intelligence and machine learning models, which aim to replicate the work of domain experts. These models, being supervised learning algorithms, need to be trained on high quality annotations produced by experts. Since the experts are often resource-limited, a cost-effective process for annotating audio is needed to get maximal use out of the data. We present an open-source interactive audio data annotation tool, NEAL (Nature+Energy Audio Labeller). Built using R and the associated Shiny framework, the tool provides a reactive environment where users can quickly annotate audio files and adjust settings that automatically change the corresponding elements of the user interface. The app has been designed with the goal of having both expert birders and citizen scientists contribute to acoustic annotation projects. The popularity and flexibility of R programming in bioacoustics means that the Shiny app can be modified for other bird labelling data sets, or even to generic audio labelling tasks. We demonstrate the app by labelling data collected from wind farm sites across Ireland. PeerJ Inc. 2023-08-25 /pmc/articles/PMC10461540/ /pubmed/37645015 http://dx.doi.org/10.7717/peerj.15913 Text en ©2023 Gibbons et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Gibbons, Anthony
Donohue, Ian
Gorman, Courtney
King, Emma
Parnell, Andrew
NEAL: an open-source tool for audio annotation
title NEAL: an open-source tool for audio annotation
title_full NEAL: an open-source tool for audio annotation
title_fullStr NEAL: an open-source tool for audio annotation
title_full_unstemmed NEAL: an open-source tool for audio annotation
title_short NEAL: an open-source tool for audio annotation
title_sort neal: an open-source tool for audio annotation
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461540/
https://www.ncbi.nlm.nih.gov/pubmed/37645015
http://dx.doi.org/10.7717/peerj.15913
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