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Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction

Hyperspectral imaging is one of the most promising techniques for intraoperative tissue characterisation. Snapshot mosaic cameras, which can capture hyperspectral data in a single exposure, have the potential to make a real-time hyperspectral imaging system for surgical decision-making possible. How...

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Autores principales: Li, Peichao, Ebner, Michael, Noonan, Philip, Horgan, Conor, Bahl, Anisha, Ourselin, Sébastien, Shapey, Jonathan, Vercauteren, Tom
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461732/
https://www.ncbi.nlm.nih.gov/pubmed/38013723
http://dx.doi.org/10.1080/21681163.2021.1997646
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author Li, Peichao
Ebner, Michael
Noonan, Philip
Horgan, Conor
Bahl, Anisha
Ourselin, Sébastien
Shapey, Jonathan
Vercauteren, Tom
author_facet Li, Peichao
Ebner, Michael
Noonan, Philip
Horgan, Conor
Bahl, Anisha
Ourselin, Sébastien
Shapey, Jonathan
Vercauteren, Tom
author_sort Li, Peichao
collection PubMed
description Hyperspectral imaging is one of the most promising techniques for intraoperative tissue characterisation. Snapshot mosaic cameras, which can capture hyperspectral data in a single exposure, have the potential to make a real-time hyperspectral imaging system for surgical decision-making possible. However, optimal exploitation of the captured data requires solving an ill-posed demosaicking problem and applying additional spectral corrections. In this work, we propose a supervised learning-based image demosaicking algorithm for snapshot hyperspectral images. Due to the lack of publicly available medical images acquired with snapshot mosaic cameras, a synthetic image generation approach is proposed to simulate snapshot images from existing medical image datasets captured by high-resolution, but slow, hyperspectral imaging devices. Image reconstruction is achieved using convolutional neural networks for hyperspectral image super-resolution, followed by spectral correction using a sensor-specific calibration matrix. The results are evaluated both quantitatively and qualitatively, showing clear improvements in image quality compared to a baseline demosaicking method using linear interpolation. Moreover, the fast processing time of 45 ms of our algorithm to obtain super-resolved RGB or oxygenation saturation maps per image for a state-of-the-art snapshot mosaic camera demonstrates the potential for its seamless integration into real-time surgical hyperspectral imaging applications.
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spelling pubmed-104617322023-08-29 Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction Li, Peichao Ebner, Michael Noonan, Philip Horgan, Conor Bahl, Anisha Ourselin, Sébastien Shapey, Jonathan Vercauteren, Tom Comput Methods Biomech Biomed Eng Imaging Vis Research Article Hyperspectral imaging is one of the most promising techniques for intraoperative tissue characterisation. Snapshot mosaic cameras, which can capture hyperspectral data in a single exposure, have the potential to make a real-time hyperspectral imaging system for surgical decision-making possible. However, optimal exploitation of the captured data requires solving an ill-posed demosaicking problem and applying additional spectral corrections. In this work, we propose a supervised learning-based image demosaicking algorithm for snapshot hyperspectral images. Due to the lack of publicly available medical images acquired with snapshot mosaic cameras, a synthetic image generation approach is proposed to simulate snapshot images from existing medical image datasets captured by high-resolution, but slow, hyperspectral imaging devices. Image reconstruction is achieved using convolutional neural networks for hyperspectral image super-resolution, followed by spectral correction using a sensor-specific calibration matrix. The results are evaluated both quantitatively and qualitatively, showing clear improvements in image quality compared to a baseline demosaicking method using linear interpolation. Moreover, the fast processing time of 45 ms of our algorithm to obtain super-resolved RGB or oxygenation saturation maps per image for a state-of-the-art snapshot mosaic camera demonstrates the potential for its seamless integration into real-time surgical hyperspectral imaging applications. Taylor & Francis 2021-11-30 /pmc/articles/PMC10461732/ /pubmed/38013723 http://dx.doi.org/10.1080/21681163.2021.1997646 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Li, Peichao
Ebner, Michael
Noonan, Philip
Horgan, Conor
Bahl, Anisha
Ourselin, Sébastien
Shapey, Jonathan
Vercauteren, Tom
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title_full Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title_fullStr Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title_full_unstemmed Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title_short Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction
title_sort deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution rgb reconstruction
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10461732/
https://www.ncbi.nlm.nih.gov/pubmed/38013723
http://dx.doi.org/10.1080/21681163.2021.1997646
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