Cargando…
A new approach for simulating inhomogeneous chemical kinetics
In this paper, inhomogeneous chemical kinetics are simulated by describing the concentrations of interacting chemical species by a linear expansion of basis functions in such a manner that the coupled reaction and diffusion processes are propagated through time efficiently by tailor-made numerical m...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462703/ https://www.ncbi.nlm.nih.gov/pubmed/37640793 http://dx.doi.org/10.1038/s41598-023-39741-y |
_version_ | 1785098089384640512 |
---|---|
author | Bradshaw, Georgia O’Leary, Mel Purser, Arthur S. F. Villagomez-Bernabe, Balder Wyett, Cyrus Currell, Frederick Webb, Marcus |
author_facet | Bradshaw, Georgia O’Leary, Mel Purser, Arthur S. F. Villagomez-Bernabe, Balder Wyett, Cyrus Currell, Frederick Webb, Marcus |
author_sort | Bradshaw, Georgia |
collection | PubMed |
description | In this paper, inhomogeneous chemical kinetics are simulated by describing the concentrations of interacting chemical species by a linear expansion of basis functions in such a manner that the coupled reaction and diffusion processes are propagated through time efficiently by tailor-made numerical methods. The approach is illustrated through modelling [Formula: see text] - and [Formula: see text] -radiolysis in thin layers of water and at their solid interfaces from the start of the chemical phase until equilibrium was established. The method’s efficiency is such that hundreds of such systems can be modelled in a few hours using a single core of a typical laptop, allowing the investigation of the effects of the underlying parameter space. Illustrative calculations showing the effects of changing dose-rate and water-layer thickness are presented. Other simulations are presented which show the approach’s capability to solve problems with spherical symmetry (an approximation to an isolated radiolytic spur), where the hollowing out of an initial Gaussian distribution is observed, in line with previous calculations. These illustrative simulations show the generality and the computational efficiency of this approach to solving reaction-diffusion problems. Furthermore, these example simulations illustrate the method’s suitability for simulating solid-fluid interfaces, which have received a lot of experimental attention in contrast to the lack of computational studies. |
format | Online Article Text |
id | pubmed-10462703 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104627032023-08-30 A new approach for simulating inhomogeneous chemical kinetics Bradshaw, Georgia O’Leary, Mel Purser, Arthur S. F. Villagomez-Bernabe, Balder Wyett, Cyrus Currell, Frederick Webb, Marcus Sci Rep Article In this paper, inhomogeneous chemical kinetics are simulated by describing the concentrations of interacting chemical species by a linear expansion of basis functions in such a manner that the coupled reaction and diffusion processes are propagated through time efficiently by tailor-made numerical methods. The approach is illustrated through modelling [Formula: see text] - and [Formula: see text] -radiolysis in thin layers of water and at their solid interfaces from the start of the chemical phase until equilibrium was established. The method’s efficiency is such that hundreds of such systems can be modelled in a few hours using a single core of a typical laptop, allowing the investigation of the effects of the underlying parameter space. Illustrative calculations showing the effects of changing dose-rate and water-layer thickness are presented. Other simulations are presented which show the approach’s capability to solve problems with spherical symmetry (an approximation to an isolated radiolytic spur), where the hollowing out of an initial Gaussian distribution is observed, in line with previous calculations. These illustrative simulations show the generality and the computational efficiency of this approach to solving reaction-diffusion problems. Furthermore, these example simulations illustrate the method’s suitability for simulating solid-fluid interfaces, which have received a lot of experimental attention in contrast to the lack of computational studies. Nature Publishing Group UK 2023-08-28 /pmc/articles/PMC10462703/ /pubmed/37640793 http://dx.doi.org/10.1038/s41598-023-39741-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Bradshaw, Georgia O’Leary, Mel Purser, Arthur S. F. Villagomez-Bernabe, Balder Wyett, Cyrus Currell, Frederick Webb, Marcus A new approach for simulating inhomogeneous chemical kinetics |
title | A new approach for simulating inhomogeneous chemical kinetics |
title_full | A new approach for simulating inhomogeneous chemical kinetics |
title_fullStr | A new approach for simulating inhomogeneous chemical kinetics |
title_full_unstemmed | A new approach for simulating inhomogeneous chemical kinetics |
title_short | A new approach for simulating inhomogeneous chemical kinetics |
title_sort | new approach for simulating inhomogeneous chemical kinetics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462703/ https://www.ncbi.nlm.nih.gov/pubmed/37640793 http://dx.doi.org/10.1038/s41598-023-39741-y |
work_keys_str_mv | AT bradshawgeorgia anewapproachforsimulatinginhomogeneouschemicalkinetics AT olearymel anewapproachforsimulatinginhomogeneouschemicalkinetics AT purserarthursf anewapproachforsimulatinginhomogeneouschemicalkinetics AT villagomezbernabebalder anewapproachforsimulatinginhomogeneouschemicalkinetics AT wyettcyrus anewapproachforsimulatinginhomogeneouschemicalkinetics AT currellfrederick anewapproachforsimulatinginhomogeneouschemicalkinetics AT webbmarcus anewapproachforsimulatinginhomogeneouschemicalkinetics AT bradshawgeorgia newapproachforsimulatinginhomogeneouschemicalkinetics AT olearymel newapproachforsimulatinginhomogeneouschemicalkinetics AT purserarthursf newapproachforsimulatinginhomogeneouschemicalkinetics AT villagomezbernabebalder newapproachforsimulatinginhomogeneouschemicalkinetics AT wyettcyrus newapproachforsimulatinginhomogeneouschemicalkinetics AT currellfrederick newapproachforsimulatinginhomogeneouschemicalkinetics AT webbmarcus newapproachforsimulatinginhomogeneouschemicalkinetics |