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Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN

Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels F...

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Detalles Bibliográficos
Autores principales: Rauf, Zunaira, Khan, Abdul Rehman, Sohail, Anabia, Alquhayz, Hani, Gwak, Jeonghwan, Khan, Asifullah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462751/
https://www.ncbi.nlm.nih.gov/pubmed/37640739
http://dx.doi.org/10.1038/s41598-023-40581-z
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author Rauf, Zunaira
Khan, Abdul Rehman
Sohail, Anabia
Alquhayz, Hani
Gwak, Jeonghwan
Khan, Asifullah
author_facet Rauf, Zunaira
Khan, Abdul Rehman
Sohail, Anabia
Alquhayz, Hani
Gwak, Jeonghwan
Khan, Asifullah
author_sort Rauf, Zunaira
collection PubMed
description Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels Fusion-based CNN “BCF-Lym-Detector” for lymphocyte detection in multiple cancer histology images. The proposed network initially selects candidate lymphocytic regions at the tissue level and then detects lymphocytes at the cellular level. The proposed “BCF-Lym-Detector” generates diverse boosted channels by utilizing the feature learning capability of different CNN architectures. In this connection, a new adaptive fusion block is developed to combine and select the most relevant lymphocyte-specific features from the generated enriched feature space. Multi-level feature learning is used to retain lymphocytic spatial information and detect lymphocytes with variable appearances. The assessment of the proposed “BCF-Lym-Detector” show substantial improvement in terms of F-score (0.93 and 0.84 on LYSTO and NuClick, respectively), which suggests that the diverse feature extraction and dynamic feature selection enhanced the feature learning capacity of the proposed network. Moreover, the proposed technique’s generalization on unseen test sets with a good recall (0.75) and F-score (0.73) shows its potential use for pathologists’ assistance.
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spelling pubmed-104627512023-08-30 Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN Rauf, Zunaira Khan, Abdul Rehman Sohail, Anabia Alquhayz, Hani Gwak, Jeonghwan Khan, Asifullah Sci Rep Article Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels Fusion-based CNN “BCF-Lym-Detector” for lymphocyte detection in multiple cancer histology images. The proposed network initially selects candidate lymphocytic regions at the tissue level and then detects lymphocytes at the cellular level. The proposed “BCF-Lym-Detector” generates diverse boosted channels by utilizing the feature learning capability of different CNN architectures. In this connection, a new adaptive fusion block is developed to combine and select the most relevant lymphocyte-specific features from the generated enriched feature space. Multi-level feature learning is used to retain lymphocytic spatial information and detect lymphocytes with variable appearances. The assessment of the proposed “BCF-Lym-Detector” show substantial improvement in terms of F-score (0.93 and 0.84 on LYSTO and NuClick, respectively), which suggests that the diverse feature extraction and dynamic feature selection enhanced the feature learning capacity of the proposed network. Moreover, the proposed technique’s generalization on unseen test sets with a good recall (0.75) and F-score (0.73) shows its potential use for pathologists’ assistance. Nature Publishing Group UK 2023-08-28 /pmc/articles/PMC10462751/ /pubmed/37640739 http://dx.doi.org/10.1038/s41598-023-40581-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rauf, Zunaira
Khan, Abdul Rehman
Sohail, Anabia
Alquhayz, Hani
Gwak, Jeonghwan
Khan, Asifullah
Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title_full Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title_fullStr Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title_full_unstemmed Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title_short Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
title_sort lymphocyte detection for cancer analysis using a novel fusion block based channel boosted cnn
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462751/
https://www.ncbi.nlm.nih.gov/pubmed/37640739
http://dx.doi.org/10.1038/s41598-023-40581-z
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