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Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN
Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels F...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462751/ https://www.ncbi.nlm.nih.gov/pubmed/37640739 http://dx.doi.org/10.1038/s41598-023-40581-z |
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author | Rauf, Zunaira Khan, Abdul Rehman Sohail, Anabia Alquhayz, Hani Gwak, Jeonghwan Khan, Asifullah |
author_facet | Rauf, Zunaira Khan, Abdul Rehman Sohail, Anabia Alquhayz, Hani Gwak, Jeonghwan Khan, Asifullah |
author_sort | Rauf, Zunaira |
collection | PubMed |
description | Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels Fusion-based CNN “BCF-Lym-Detector” for lymphocyte detection in multiple cancer histology images. The proposed network initially selects candidate lymphocytic regions at the tissue level and then detects lymphocytes at the cellular level. The proposed “BCF-Lym-Detector” generates diverse boosted channels by utilizing the feature learning capability of different CNN architectures. In this connection, a new adaptive fusion block is developed to combine and select the most relevant lymphocyte-specific features from the generated enriched feature space. Multi-level feature learning is used to retain lymphocytic spatial information and detect lymphocytes with variable appearances. The assessment of the proposed “BCF-Lym-Detector” show substantial improvement in terms of F-score (0.93 and 0.84 on LYSTO and NuClick, respectively), which suggests that the diverse feature extraction and dynamic feature selection enhanced the feature learning capacity of the proposed network. Moreover, the proposed technique’s generalization on unseen test sets with a good recall (0.75) and F-score (0.73) shows its potential use for pathologists’ assistance. |
format | Online Article Text |
id | pubmed-10462751 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104627512023-08-30 Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN Rauf, Zunaira Khan, Abdul Rehman Sohail, Anabia Alquhayz, Hani Gwak, Jeonghwan Khan, Asifullah Sci Rep Article Tumor-infiltrating lymphocytes, specialized immune cells, are considered an important biomarker in cancer analysis. Automated lymphocyte detection is challenging due to its heterogeneous morphology, variable distribution, and presence of artifacts. In this work, we propose a novel Boosted Channels Fusion-based CNN “BCF-Lym-Detector” for lymphocyte detection in multiple cancer histology images. The proposed network initially selects candidate lymphocytic regions at the tissue level and then detects lymphocytes at the cellular level. The proposed “BCF-Lym-Detector” generates diverse boosted channels by utilizing the feature learning capability of different CNN architectures. In this connection, a new adaptive fusion block is developed to combine and select the most relevant lymphocyte-specific features from the generated enriched feature space. Multi-level feature learning is used to retain lymphocytic spatial information and detect lymphocytes with variable appearances. The assessment of the proposed “BCF-Lym-Detector” show substantial improvement in terms of F-score (0.93 and 0.84 on LYSTO and NuClick, respectively), which suggests that the diverse feature extraction and dynamic feature selection enhanced the feature learning capacity of the proposed network. Moreover, the proposed technique’s generalization on unseen test sets with a good recall (0.75) and F-score (0.73) shows its potential use for pathologists’ assistance. Nature Publishing Group UK 2023-08-28 /pmc/articles/PMC10462751/ /pubmed/37640739 http://dx.doi.org/10.1038/s41598-023-40581-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rauf, Zunaira Khan, Abdul Rehman Sohail, Anabia Alquhayz, Hani Gwak, Jeonghwan Khan, Asifullah Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title | Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title_full | Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title_fullStr | Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title_full_unstemmed | Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title_short | Lymphocyte detection for cancer analysis using a novel fusion block based channel boosted CNN |
title_sort | lymphocyte detection for cancer analysis using a novel fusion block based channel boosted cnn |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462751/ https://www.ncbi.nlm.nih.gov/pubmed/37640739 http://dx.doi.org/10.1038/s41598-023-40581-z |
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