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A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis
Hashimoto’s thyroiditis is an autoimmune disorder characterized by the destruction of thyroid cells through immune-mediated mechanisms involving cells and antibodies. The condition can trigger disturbances in metabolism, leading to the development of other autoimmune diseases, known as concomitant d...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464155/ https://www.ncbi.nlm.nih.gov/pubmed/37620755 http://dx.doi.org/10.1186/s12859-023-05443-5 |
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author | Ataş, Pınar Karadayı |
author_facet | Ataş, Pınar Karadayı |
author_sort | Ataş, Pınar Karadayı |
collection | PubMed |
description | Hashimoto’s thyroiditis is an autoimmune disorder characterized by the destruction of thyroid cells through immune-mediated mechanisms involving cells and antibodies. The condition can trigger disturbances in metabolism, leading to the development of other autoimmune diseases, known as concomitant diseases. Multiple concomitant diseases may coexist in a single individual, making it challenging to diagnose and manage them effectively. This study aims to propose a novel hybrid algorithm that classifies concomitant diseases associated with Hashimoto’s thyroiditis based on sequences. The approach involves building distinct prediction models for each class and using the output of one model as input for the subsequent one, resulting in a dynamic decision-making process. Genes associated with concomitant diseases were collected alongside those related to Hashimoto’s thyroiditis, and their sequences were obtained from the NCBI site in fasta format. The hybrid algorithm was evaluated against common machine learning algorithms and their various combinations. The experimental results demonstrate that the proposed hybrid model outperforms existing classification methods in terms of performance metrics. The significance of this study lies in its two distinctive aspects. Firstly, it presents a new benchmarking dataset that has not been previously developed in this field, using diverse methods. Secondly, it proposes a more effective and efficient solution that accounts for the dynamic nature of the dataset. The hybrid approach holds promise in investigating the genetic heterogeneity of complex diseases such as Hashimoto’s thyroiditis and identifying new autoimmune disease genes. Additionally, the results of this study may aid in the development of genetic screening tools and laboratory experiments targeting Hashimoto’s thyroiditis genetic risk factors. New software, models, and techniques for computing, including systems biology, machine learning, and artificial intelligence, are used in our study. |
format | Online Article Text |
id | pubmed-10464155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-104641552023-08-30 A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis Ataş, Pınar Karadayı BMC Bioinformatics Research Hashimoto’s thyroiditis is an autoimmune disorder characterized by the destruction of thyroid cells through immune-mediated mechanisms involving cells and antibodies. The condition can trigger disturbances in metabolism, leading to the development of other autoimmune diseases, known as concomitant diseases. Multiple concomitant diseases may coexist in a single individual, making it challenging to diagnose and manage them effectively. This study aims to propose a novel hybrid algorithm that classifies concomitant diseases associated with Hashimoto’s thyroiditis based on sequences. The approach involves building distinct prediction models for each class and using the output of one model as input for the subsequent one, resulting in a dynamic decision-making process. Genes associated with concomitant diseases were collected alongside those related to Hashimoto’s thyroiditis, and their sequences were obtained from the NCBI site in fasta format. The hybrid algorithm was evaluated against common machine learning algorithms and their various combinations. The experimental results demonstrate that the proposed hybrid model outperforms existing classification methods in terms of performance metrics. The significance of this study lies in its two distinctive aspects. Firstly, it presents a new benchmarking dataset that has not been previously developed in this field, using diverse methods. Secondly, it proposes a more effective and efficient solution that accounts for the dynamic nature of the dataset. The hybrid approach holds promise in investigating the genetic heterogeneity of complex diseases such as Hashimoto’s thyroiditis and identifying new autoimmune disease genes. Additionally, the results of this study may aid in the development of genetic screening tools and laboratory experiments targeting Hashimoto’s thyroiditis genetic risk factors. New software, models, and techniques for computing, including systems biology, machine learning, and artificial intelligence, are used in our study. BioMed Central 2023-08-24 /pmc/articles/PMC10464155/ /pubmed/37620755 http://dx.doi.org/10.1186/s12859-023-05443-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Ataş, Pınar Karadayı A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title | A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title_full | A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title_fullStr | A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title_full_unstemmed | A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title_short | A novel hybrid model to predict concomitant diseases for Hashimoto’s thyroiditis |
title_sort | novel hybrid model to predict concomitant diseases for hashimoto’s thyroiditis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464155/ https://www.ncbi.nlm.nih.gov/pubmed/37620755 http://dx.doi.org/10.1186/s12859-023-05443-5 |
work_keys_str_mv | AT ataspınarkaradayı anovelhybridmodeltopredictconcomitantdiseasesforhashimotosthyroiditis AT ataspınarkaradayı novelhybridmodeltopredictconcomitantdiseasesforhashimotosthyroiditis |