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Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum

BACKGROUND: The glyoxalase system includes glyoxalase I (GLXI), glyoxalase II (GLXII) and glyoxalase III (GLXIII), which are responsible for methylglyoxal (MG) detoxification and involved in abiotic stress responses such as drought, salinity and heavy metal. RESULTS: In this study, a total of 620 GL...

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Autores principales: Xu, Menglin, Zuo, Dongyun, Wang, Qiaolian, Lv, Limin, Zhang, Youping, Jiao, Huixin, Zhang, Xiang, Yang, Yi, Song, Guoli, Cheng, Hailiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464159/
https://www.ncbi.nlm.nih.gov/pubmed/37608304
http://dx.doi.org/10.1186/s12864-023-09524-w
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author Xu, Menglin
Zuo, Dongyun
Wang, Qiaolian
Lv, Limin
Zhang, Youping
Jiao, Huixin
Zhang, Xiang
Yang, Yi
Song, Guoli
Cheng, Hailiang
author_facet Xu, Menglin
Zuo, Dongyun
Wang, Qiaolian
Lv, Limin
Zhang, Youping
Jiao, Huixin
Zhang, Xiang
Yang, Yi
Song, Guoli
Cheng, Hailiang
author_sort Xu, Menglin
collection PubMed
description BACKGROUND: The glyoxalase system includes glyoxalase I (GLXI), glyoxalase II (GLXII) and glyoxalase III (GLXIII), which are responsible for methylglyoxal (MG) detoxification and involved in abiotic stress responses such as drought, salinity and heavy metal. RESULTS: In this study, a total of 620 GLX family genes were identified from 21 different plant species. The results of evolutionary analysis showed that GLX genes exist in all species from lower plants to higher plants, inferring that GLX genes might be important for plants, and GLXI and GLXII account for the majority. In addition, motif showed an expanding trend in the process of evolution. The analysis of cis-acting elements in 21 different plant species showed that the promoter region of the GLX genes were rich in phytohormones and biotic and abiotic stress-related elements, indicating that GLX genes can participate in a variety of life processes. In cotton, GLXs could be divided into two groups and most GLXIs distributed in group I, GLXIIs and GLXIIIs mainly belonged to group II, indicating that there are more similarities between GLXII and GLXIII in cotton evolution. The transcriptome data analysis and quantitative real-time PCR analysis (qRT-PCR) show that some members of GLX family would respond to high temperature treatment in G.hirsutum. The protein interaction network of GLXs in G.hirsutum implied that most members can participate in various life processes through protein interactions. CONCLUSIONS: The results elucidated the evolutionary history of GLX family genes in plants and lay the foundation for their functions analysis in cotton. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-023-09524-w.
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spelling pubmed-104641592023-08-30 Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum Xu, Menglin Zuo, Dongyun Wang, Qiaolian Lv, Limin Zhang, Youping Jiao, Huixin Zhang, Xiang Yang, Yi Song, Guoli Cheng, Hailiang BMC Genomics Research BACKGROUND: The glyoxalase system includes glyoxalase I (GLXI), glyoxalase II (GLXII) and glyoxalase III (GLXIII), which are responsible for methylglyoxal (MG) detoxification and involved in abiotic stress responses such as drought, salinity and heavy metal. RESULTS: In this study, a total of 620 GLX family genes were identified from 21 different plant species. The results of evolutionary analysis showed that GLX genes exist in all species from lower plants to higher plants, inferring that GLX genes might be important for plants, and GLXI and GLXII account for the majority. In addition, motif showed an expanding trend in the process of evolution. The analysis of cis-acting elements in 21 different plant species showed that the promoter region of the GLX genes were rich in phytohormones and biotic and abiotic stress-related elements, indicating that GLX genes can participate in a variety of life processes. In cotton, GLXs could be divided into two groups and most GLXIs distributed in group I, GLXIIs and GLXIIIs mainly belonged to group II, indicating that there are more similarities between GLXII and GLXIII in cotton evolution. The transcriptome data analysis and quantitative real-time PCR analysis (qRT-PCR) show that some members of GLX family would respond to high temperature treatment in G.hirsutum. The protein interaction network of GLXs in G.hirsutum implied that most members can participate in various life processes through protein interactions. CONCLUSIONS: The results elucidated the evolutionary history of GLX family genes in plants and lay the foundation for their functions analysis in cotton. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-023-09524-w. BioMed Central 2023-08-22 /pmc/articles/PMC10464159/ /pubmed/37608304 http://dx.doi.org/10.1186/s12864-023-09524-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Xu, Menglin
Zuo, Dongyun
Wang, Qiaolian
Lv, Limin
Zhang, Youping
Jiao, Huixin
Zhang, Xiang
Yang, Yi
Song, Guoli
Cheng, Hailiang
Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title_full Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title_fullStr Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title_full_unstemmed Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title_short Identification and molecular evolution of the GLX genes in 21 plant species: a focus on the Gossypium hirsutum
title_sort identification and molecular evolution of the glx genes in 21 plant species: a focus on the gossypium hirsutum
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464159/
https://www.ncbi.nlm.nih.gov/pubmed/37608304
http://dx.doi.org/10.1186/s12864-023-09524-w
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