Cargando…

Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

BACKGROUND: Mangrove wetlands are coastal ecosystems with important ecological features and provide habitats for diverse microorganisms with key roles in nutrient and biogeochemical cycling. However, the overall metabolic potentials and ecological roles of microbial community in mangrove sediment ar...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Zhi-Feng, Liu, Li-Rui, Pan, Yue-Ping, Pan, Jie, Li, Meng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464287/ https://www.ncbi.nlm.nih.gov/pubmed/37612768 http://dx.doi.org/10.1186/s40168-023-01630-x

Ejemplares similares

Biogeography, Assembly Patterns, Driving Factors, and Interactions of Archaeal Community in Mangrove Sediments
por: Zhang, Zhi-Feng, et al.
Publicado: (2021)

Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments
por: Li, Yingdong, et al.
Publicado: (2019)

Mangrove succession enriches the sediment microbial community in South China
por: Chen, Quan, et al.
Publicado: (2016)

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics
por: Andreote, Fernando Dini, et al.
Publicado: (2012)

Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments
por: Du, Huan, et al.
Publicado: (2022)

Correction: Microbial active functional modules derived from network analysis and metabolic interactions decipher the complex microbiome assembly in mangrove sediments
por: Du, Huan, et al.
Publicado: (2022)

Occurrence and Distribution of Tetrabromobisphenol A and Diversity of Microbial Community Structure in the Sediments of Mangrove
por: Jiang, Yongcan, et al.
Publicado: (2023)

Spatial Variations of the Methanogenic Communities in the Sediments of Tropical Mangroves
por: Jing, Hongmei, et al.
Publicado: (2016)

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
por: Mitchell, Alex L, et al.
Publicado: (2018)

The microbial landscape in bioturbated mangrove sediment: A resource for promoting nature‐based solutions for mangroves
por: Booth, Jenny M., et al.
Publicado: (2023)

Microbial diversity in Brazilian mangrove sediments – a mini review
por: Ghizelini, Angela Michelato, et al.
Publicado: (2012)

Metagenomic insights into surface water microbial communities of a South Asian mangrove ecosystem
por: Ghosh, Anwesha, et al.
Publicado: (2022)

Genomic and transcriptomic insights into methanogenesis potential of novel methanogens from mangrove sediments
por: Zhang, Cui-Jing, et al.
Publicado: (2020)

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)
por: Howe, Adina, et al.
Publicado: (2015)

Metagenomics-Based Discovery of Malachite Green-Degradation Gene Families and Enzymes From Mangrove Sediment
por: Qu, Wu, et al.
Publicado: (2018)

Distinct Habitats Select Particular Bacterial Communities in Mangrove Sediments
por: Rocha, Lidianne L., et al.
Publicado: (2016)

Global assembly of microbial communities
por: Wang, Jianing, et al.
Publicado: (2023)

Microbial diversity and anaerobic hydrocarbon degradation potential in an oil-contaminated mangrove sediment
por: Andrade, Luiza L, et al.
Publicado: (2012)

Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems
por: Imchen, Madangchanok, et al.
Publicado: (2017)

Metagenomic Analysis Reveals the Response of Microbial Communities and Their Functions in Lake Sediment to Environmental Factors
por: Song, Dan, et al.
Publicado: (2022)

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
por: Mason, Olivia U, et al.
Publicado: (2014)

Metagenomic Evidence of Microbial Community Responsiveness to Phosphorus and Salinity Gradients in Seagrass Sediments
por: Fraser, Matthew W., et al.
Publicado: (2018)

Diversity and Dynamics of Microbial Community Structure in Different Mangrove, Marine and Freshwater Sediments During Anaerobic Debromination of PBDEs
por: Wang, Ya Fen, et al.
Publicado: (2018)

Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion
por: Chen, Weidong, et al.
Publicado: (2021)

309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula
por: Nathani, Neelam M., et al.
Publicado: (2021)

Metagenomics reveals biogeochemical processes carried out by sediment microbial communities in a shallow eutrophic freshwater lake
por: Kuang, Bo, et al.
Publicado: (2023)

Evaluation of short read metagenomic assembly
por: Charuvaka, Anveshi, et al.
Publicado: (2011)

Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing
por: Tao, Ye, et al.
Publicado: (2022)

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment
por: Costa, Patrícia S., et al.
Publicado: (2015)

Metagenomic insights into the effects of submerged plants on functional potential of microbial communities in wetland sediments
por: Wang, Binhao, et al.
Publicado: (2021)

Characteristics of Microbial Community and Function With the Succession of Mangroves
por: Mai, Zhimao, et al.
Publicado: (2021)

Effects of Degradation on Microbial Communities of an Amazonian Mangrove
por: da Costa, Gleyciane Machado, et al.
Publicado: (2023)

Metagenomics Investigation of Agarlytic Genes and Genomes in Mangrove Sediments in China: A Potential Repertory for Carbohydrate-Active Enzymes
por: Qu, Wu, et al.
Publicado: (2018)

Metagenomic Analysis of Microbial Alliances for Efficient Degradation of PHE: Microbial Community Structure and Reconstruction of Metabolic Network
por: Xu, Pan, et al.
Publicado: (2022)

Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale
por: Zhuang, Wei, et al.
Publicado: (2020)

Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
por: Walters, Kevin A., et al.
Publicado: (2022)

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes
por: Zhang, Cui-Jing, et al.
Publicado: (2019)

Genotyping Microbial Communities with MIDAS2: From Metagenomic Reads to Allele Tables
por: Zhao, Chunyu, et al.
Publicado: (2022)

Author Correction: Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems
por: Imchen, Madangchanok, et al.
Publicado: (2018)

Sediment microbial community structure associated to different ecological types of mangroves in Celestún, a coastal lagoon in the Yucatan Peninsula, Mexico
por: Gómez-Acata, Elizabeth Selene, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_hqre0doj2le5o40hjfqovopbjo