Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data

OBJECTIVE: Eutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role in addressing the problem of eutrophication. This study aimed to take a first genomic look at C. su...

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Autores principales: Meckoni, Samuel Nestor, Nass, Benneth, Pucker, Boas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Research Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464454/
https://www.ncbi.nlm.nih.gov/pubmed/37626355
http://dx.doi.org/10.1186/s13104-023-06459-z
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author Meckoni, Samuel Nestor
Nass, Benneth
Pucker, Boas
author_facet Meckoni, Samuel Nestor
Nass, Benneth
Pucker, Boas
author_sort Meckoni, Samuel Nestor
collection PubMed
description OBJECTIVE: Eutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role in addressing the problem of eutrophication. This study aimed to take a first genomic look at C. submersum. RESULTS: Sequencing of gDNA from C. submersum yielded enough reads to assemble a plastome. Subsequent annotation and phylogenetic analysis validated existing information regarding angiosperm relationships and the positioning of Ceratophylalles in a wider phylogenetic context. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06459-z.
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spelling pubmed-104644542023-08-30 Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data Meckoni, Samuel Nestor Nass, Benneth Pucker, Boas BMC Res Notes Research Note OBJECTIVE: Eutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role in addressing the problem of eutrophication. This study aimed to take a first genomic look at C. submersum. RESULTS: Sequencing of gDNA from C. submersum yielded enough reads to assemble a plastome. Subsequent annotation and phylogenetic analysis validated existing information regarding angiosperm relationships and the positioning of Ceratophylalles in a wider phylogenetic context. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06459-z. BioMed Central 2023-08-25 /pmc/articles/PMC10464454/ /pubmed/37626355 http://dx.doi.org/10.1186/s13104-023-06459-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Meckoni, Samuel Nestor
Nass, Benneth
Pucker, Boas
Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title_full Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title_fullStr Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title_full_unstemmed Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title_short Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
title_sort phylogenetic placement of ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464454/
https://www.ncbi.nlm.nih.gov/pubmed/37626355
http://dx.doi.org/10.1186/s13104-023-06459-z
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