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Evaluating models and assessment techniques for understanding oral biofilm complexity

Oral biofilms are three‐dimensional (3D) complex entities initiating dental diseases and have been evaluated extensively in the scientific literature using several biofilm models and assessment techniques. The list of biofilm models and assessment techniques may overwhelm a novice biofilm researcher...

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Autores principales: Ramachandra, Srinivas Sulugodu, Wright, Patricia, Han, Pingping, Abdal‐hay, Abdalla, Lee, Ryan S. B., Ivanovski, Saso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464519/
https://www.ncbi.nlm.nih.gov/pubmed/37642488
http://dx.doi.org/10.1002/mbo3.1377
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author Ramachandra, Srinivas Sulugodu
Wright, Patricia
Han, Pingping
Abdal‐hay, Abdalla
Lee, Ryan S. B.
Ivanovski, Saso
author_facet Ramachandra, Srinivas Sulugodu
Wright, Patricia
Han, Pingping
Abdal‐hay, Abdalla
Lee, Ryan S. B.
Ivanovski, Saso
author_sort Ramachandra, Srinivas Sulugodu
collection PubMed
description Oral biofilms are three‐dimensional (3D) complex entities initiating dental diseases and have been evaluated extensively in the scientific literature using several biofilm models and assessment techniques. The list of biofilm models and assessment techniques may overwhelm a novice biofilm researcher. This narrative review aims to summarize the existing literature on biofilm models and assessment techniques, providing additional information on selecting an appropriate model and corresponding assessment techniques, which may be useful as a guide to the beginner biofilm investigator and as a refresher to experienced researchers. The review addresses previously established 2D models, outlining their advantages and limitations based on the growth environment, availability of nutrients, and the number of bacterial species, while also exploring novel 3D biofilm models. The growth of biofilms on clinically relevant 3D models, particularly melt electrowritten fibrous scaffolds, is discussed with a specific focus that has not been previously reported. Relevant studies on validated oral microcosm models that have recently gaining prominence are summarized. The review analyses the advantages and limitations of biofilm assessment methods, including colony forming unit culture, crystal violet, 2,3‐bis‐(2‐methoxy‐4‐nitro‐5‐sulfophenyl)‐2H‐tetrazolium‐5‐carboxanilide inner salt assays, confocal microscopy, fluorescence in situ hybridization, scanning electron microscopy, quantitative polymerase chain reaction, and next‐generation sequencing. The use of more complex models with advanced assessment methodologies, subject to the availability of equipment/facilities, may help in developing clinically relevant biofilms and answering appropriate research questions.
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spelling pubmed-104645192023-08-30 Evaluating models and assessment techniques for understanding oral biofilm complexity Ramachandra, Srinivas Sulugodu Wright, Patricia Han, Pingping Abdal‐hay, Abdalla Lee, Ryan S. B. Ivanovski, Saso Microbiologyopen Reviews Oral biofilms are three‐dimensional (3D) complex entities initiating dental diseases and have been evaluated extensively in the scientific literature using several biofilm models and assessment techniques. The list of biofilm models and assessment techniques may overwhelm a novice biofilm researcher. This narrative review aims to summarize the existing literature on biofilm models and assessment techniques, providing additional information on selecting an appropriate model and corresponding assessment techniques, which may be useful as a guide to the beginner biofilm investigator and as a refresher to experienced researchers. The review addresses previously established 2D models, outlining their advantages and limitations based on the growth environment, availability of nutrients, and the number of bacterial species, while also exploring novel 3D biofilm models. The growth of biofilms on clinically relevant 3D models, particularly melt electrowritten fibrous scaffolds, is discussed with a specific focus that has not been previously reported. Relevant studies on validated oral microcosm models that have recently gaining prominence are summarized. The review analyses the advantages and limitations of biofilm assessment methods, including colony forming unit culture, crystal violet, 2,3‐bis‐(2‐methoxy‐4‐nitro‐5‐sulfophenyl)‐2H‐tetrazolium‐5‐carboxanilide inner salt assays, confocal microscopy, fluorescence in situ hybridization, scanning electron microscopy, quantitative polymerase chain reaction, and next‐generation sequencing. The use of more complex models with advanced assessment methodologies, subject to the availability of equipment/facilities, may help in developing clinically relevant biofilms and answering appropriate research questions. John Wiley and Sons Inc. 2023-08-29 /pmc/articles/PMC10464519/ /pubmed/37642488 http://dx.doi.org/10.1002/mbo3.1377 Text en © 2023 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Ramachandra, Srinivas Sulugodu
Wright, Patricia
Han, Pingping
Abdal‐hay, Abdalla
Lee, Ryan S. B.
Ivanovski, Saso
Evaluating models and assessment techniques for understanding oral biofilm complexity
title Evaluating models and assessment techniques for understanding oral biofilm complexity
title_full Evaluating models and assessment techniques for understanding oral biofilm complexity
title_fullStr Evaluating models and assessment techniques for understanding oral biofilm complexity
title_full_unstemmed Evaluating models and assessment techniques for understanding oral biofilm complexity
title_short Evaluating models and assessment techniques for understanding oral biofilm complexity
title_sort evaluating models and assessment techniques for understanding oral biofilm complexity
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464519/
https://www.ncbi.nlm.nih.gov/pubmed/37642488
http://dx.doi.org/10.1002/mbo3.1377
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