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Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae

The family Ca. Methanoperedenaceae archaea mediates the anaerobic oxidation of methane (AOM) in different terrestrial environments. Using a newly developed high‐pressure laboratory incubation system, we investigated 214‐ and 249‐m deep groundwater samples at Horonobe Underground Research Laboratory,...

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Autores principales: Nishimura, Hiroki, Kouduka, Mariko, Fukuda, Akari, Ishimura, Toyoho, Amano, Yuki, Beppu, Hikari, Miyakawa, Kazuya, Suzuki, Yohey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464669/
https://www.ncbi.nlm.nih.gov/pubmed/36779262
http://dx.doi.org/10.1111/1758-2229.13146
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author Nishimura, Hiroki
Kouduka, Mariko
Fukuda, Akari
Ishimura, Toyoho
Amano, Yuki
Beppu, Hikari
Miyakawa, Kazuya
Suzuki, Yohey
author_facet Nishimura, Hiroki
Kouduka, Mariko
Fukuda, Akari
Ishimura, Toyoho
Amano, Yuki
Beppu, Hikari
Miyakawa, Kazuya
Suzuki, Yohey
author_sort Nishimura, Hiroki
collection PubMed
description The family Ca. Methanoperedenaceae archaea mediates the anaerobic oxidation of methane (AOM) in different terrestrial environments. Using a newly developed high‐pressure laboratory incubation system, we investigated 214‐ and 249‐m deep groundwater samples at Horonobe Underground Research Laboratory, Japan, where the high and low abundances of Ca. Methanoperedenaceae archaea have been shown by genome‐resolved metagenomics, respectively. The groundwater samples amended with (13)C‐labelled methane and amorphous Fe(III) were incubated at a pressure of 1.6 MPa. After 3–7 days of incubation, the AOM rate was 45.8 ± 19.8 nM/day in 214‐m groundwater. However, almost no activity was detected from 249‐m groundwater. Based on the results from 16S rRNA gene analysis, the abundance of Ca. Methanoperedenaceae archaea was high in the 214‐m deep groundwater sample, whereas Ca. Methanoperedenaceae archaea was undetected in the 249‐m deep groundwater sample. These results support the in situ AOM activity of Ca. Methanoperedenaceae archaea in the 214‐m deep subsurface borehole interval. Although the presence of Fe‐bearing phyllosilicates was demonstrated in the 214‐m deep groundwater, it needs to be determined whether Ca. Methanoperedenaceae archaea use the Fe‐bearing phyllosilicates as in situ electron acceptors by high‐pressure incubation amended with the Fe‐bearing phyllosilicates.
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spelling pubmed-104646692023-08-30 Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae Nishimura, Hiroki Kouduka, Mariko Fukuda, Akari Ishimura, Toyoho Amano, Yuki Beppu, Hikari Miyakawa, Kazuya Suzuki, Yohey Environ Microbiol Rep Brief Reports The family Ca. Methanoperedenaceae archaea mediates the anaerobic oxidation of methane (AOM) in different terrestrial environments. Using a newly developed high‐pressure laboratory incubation system, we investigated 214‐ and 249‐m deep groundwater samples at Horonobe Underground Research Laboratory, Japan, where the high and low abundances of Ca. Methanoperedenaceae archaea have been shown by genome‐resolved metagenomics, respectively. The groundwater samples amended with (13)C‐labelled methane and amorphous Fe(III) were incubated at a pressure of 1.6 MPa. After 3–7 days of incubation, the AOM rate was 45.8 ± 19.8 nM/day in 214‐m groundwater. However, almost no activity was detected from 249‐m groundwater. Based on the results from 16S rRNA gene analysis, the abundance of Ca. Methanoperedenaceae archaea was high in the 214‐m deep groundwater sample, whereas Ca. Methanoperedenaceae archaea was undetected in the 249‐m deep groundwater sample. These results support the in situ AOM activity of Ca. Methanoperedenaceae archaea in the 214‐m deep subsurface borehole interval. Although the presence of Fe‐bearing phyllosilicates was demonstrated in the 214‐m deep groundwater, it needs to be determined whether Ca. Methanoperedenaceae archaea use the Fe‐bearing phyllosilicates as in situ electron acceptors by high‐pressure incubation amended with the Fe‐bearing phyllosilicates. John Wiley & Sons, Inc. 2023-02-13 /pmc/articles/PMC10464669/ /pubmed/36779262 http://dx.doi.org/10.1111/1758-2229.13146 Text en © 2023 The Authors. Environmental Microbiology Reports published by Applied Microbiology International and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Reports
Nishimura, Hiroki
Kouduka, Mariko
Fukuda, Akari
Ishimura, Toyoho
Amano, Yuki
Beppu, Hikari
Miyakawa, Kazuya
Suzuki, Yohey
Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title_full Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title_fullStr Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title_full_unstemmed Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title_short Anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by Ca . Methanoperedenaceae
title_sort anaerobic methane‐oxidizing activity in a deep underground borehole dominantly colonized by ca . methanoperedenaceae
topic Brief Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464669/
https://www.ncbi.nlm.nih.gov/pubmed/36779262
http://dx.doi.org/10.1111/1758-2229.13146
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