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Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking

Salidroside is a natural product of phenols, which has a wide scape of pharmacological effects, but its pharmacological effects and molecular mechanism on endometrial cancer are not clear. To systematically explore the pharmacological effects and molecular mechanisms of salidroside on endometrial ca...

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Autores principales: Yang, Panpan, Chai, Yihong, Wei, Min, Ge, Yan, Xu, Feixue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10465614/
https://www.ncbi.nlm.nih.gov/pubmed/37644107
http://dx.doi.org/10.1038/s41598-023-41157-7
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author Yang, Panpan
Chai, Yihong
Wei, Min
Ge, Yan
Xu, Feixue
author_facet Yang, Panpan
Chai, Yihong
Wei, Min
Ge, Yan
Xu, Feixue
author_sort Yang, Panpan
collection PubMed
description Salidroside is a natural product of phenols, which has a wide scape of pharmacological effects, but its pharmacological effects and molecular mechanism on endometrial cancer are not clear. To systematically explore the pharmacological effects and molecular mechanisms of salidroside on endometrial cancer through the method of network pharmacology. The possible target genes of salidroside were obtained through different pharmacological databases and analysis platforms, and then the relevant target genes of endometrial cancer were obtained through the GeneCards website, and the target genes were uniformly converted into standardized gene names with Uniprot. The collected data were then processed to obtain common target genes and further analyzed through the String website to construct a protein–protein interaction (PPI) network, followed by gene ontology (GO) functional annotation and Kyoto Gene and Genome Encyclopedia (KEGG) pathway analysis. We further interpreted the molecular mechanism of salidroside for the treatment of endometrial cancer by constructing a “drug component–target gene–disease” network. Finally, we performed molecular docking to validate the binding conformation between salidroside and the candidate target genes. There were 175 target genes of salidroside after normalization, among which 113 target genes interacted with endometrial cancer. GO analysis indicated that the anti-endometrial cancer effect of salidroside may be strongly related to biological processes such as apoptosis and response to drug. KEGG analysis indicated that its mechanism may be related to pathway in cancer and PI3K-AKT signaling pathway. Molecular docking showed that salidroside had high affinity with five key genes. Based on the novel network pharmacology and molecular docking validation research methods, we have revealed for the first time the potential mechanism of salidroside in the therapy of endometrial cancer.
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spelling pubmed-104656142023-08-31 Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking Yang, Panpan Chai, Yihong Wei, Min Ge, Yan Xu, Feixue Sci Rep Article Salidroside is a natural product of phenols, which has a wide scape of pharmacological effects, but its pharmacological effects and molecular mechanism on endometrial cancer are not clear. To systematically explore the pharmacological effects and molecular mechanisms of salidroside on endometrial cancer through the method of network pharmacology. The possible target genes of salidroside were obtained through different pharmacological databases and analysis platforms, and then the relevant target genes of endometrial cancer were obtained through the GeneCards website, and the target genes were uniformly converted into standardized gene names with Uniprot. The collected data were then processed to obtain common target genes and further analyzed through the String website to construct a protein–protein interaction (PPI) network, followed by gene ontology (GO) functional annotation and Kyoto Gene and Genome Encyclopedia (KEGG) pathway analysis. We further interpreted the molecular mechanism of salidroside for the treatment of endometrial cancer by constructing a “drug component–target gene–disease” network. Finally, we performed molecular docking to validate the binding conformation between salidroside and the candidate target genes. There were 175 target genes of salidroside after normalization, among which 113 target genes interacted with endometrial cancer. GO analysis indicated that the anti-endometrial cancer effect of salidroside may be strongly related to biological processes such as apoptosis and response to drug. KEGG analysis indicated that its mechanism may be related to pathway in cancer and PI3K-AKT signaling pathway. Molecular docking showed that salidroside had high affinity with five key genes. Based on the novel network pharmacology and molecular docking validation research methods, we have revealed for the first time the potential mechanism of salidroside in the therapy of endometrial cancer. Nature Publishing Group UK 2023-08-29 /pmc/articles/PMC10465614/ /pubmed/37644107 http://dx.doi.org/10.1038/s41598-023-41157-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yang, Panpan
Chai, Yihong
Wei, Min
Ge, Yan
Xu, Feixue
Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title_full Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title_fullStr Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title_full_unstemmed Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title_short Mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
title_sort mechanism of salidroside in the treatment of endometrial cancer based on network pharmacology and molecular docking
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10465614/
https://www.ncbi.nlm.nih.gov/pubmed/37644107
http://dx.doi.org/10.1038/s41598-023-41157-7
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