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ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation

Epitranscriptomics studies the mechanisms of acquired RNA modifications. The epitranscriptome is dynamically regulated by specific enzymatic reactions, and the proper execution of these enzymatic RNA modifications regulates a variety of physiological RNA functions. However, the lack of experimental...

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Autores principales: Kogaki, Takahiro, Hase, Hiroaki, Tanimoto, Masaya, Tashiro, Atyuya, Kitae, Kaori, Ueda, Yuko, Jingushi, Kentaro, Tsujikawa, Kazutake
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Biochemistry and Molecular Biology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10465949/
https://www.ncbi.nlm.nih.gov/pubmed/37507018
http://dx.doi.org/10.1016/j.jbc.2023.105093
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author Kogaki, Takahiro
Hase, Hiroaki
Tanimoto, Masaya
Tashiro, Atyuya
Kitae, Kaori
Ueda, Yuko
Jingushi, Kentaro
Tsujikawa, Kazutake
author_facet Kogaki, Takahiro
Hase, Hiroaki
Tanimoto, Masaya
Tashiro, Atyuya
Kitae, Kaori
Ueda, Yuko
Jingushi, Kentaro
Tsujikawa, Kazutake
author_sort Kogaki, Takahiro
collection PubMed
description Epitranscriptomics studies the mechanisms of acquired RNA modifications. The epitranscriptome is dynamically regulated by specific enzymatic reactions, and the proper execution of these enzymatic RNA modifications regulates a variety of physiological RNA functions. However, the lack of experimental tools, such as antibodies for RNA modification, limits the development of epitranscriptomic research. Furthermore, the regulatory enzymes of many RNA modifications have not yet been identified. Herein, we aimed to identify new molecular mechanisms involved in RNA modification by focusing on the AlkB homolog (ALKBH) family molecules, a family of RNA demethylases. We demonstrated that ALKBH4 interacts with small RNA, regulating the formation and metabolism of the (R)-5-carboxyhydroxymethyl uridine methyl ester. We also found that the reaction of ALKBH4 with small RNA enhances protein translation efficiency in an in vitro assay system. These findings indicate that ALKBH4 is involved in the regulation of uridine modification and expand on the role of tRNA-mediated translation control through ALKBH4.
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spelling pubmed-104659492023-08-31 ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation Kogaki, Takahiro Hase, Hiroaki Tanimoto, Masaya Tashiro, Atyuya Kitae, Kaori Ueda, Yuko Jingushi, Kentaro Tsujikawa, Kazutake J Biol Chem Research Article Epitranscriptomics studies the mechanisms of acquired RNA modifications. The epitranscriptome is dynamically regulated by specific enzymatic reactions, and the proper execution of these enzymatic RNA modifications regulates a variety of physiological RNA functions. However, the lack of experimental tools, such as antibodies for RNA modification, limits the development of epitranscriptomic research. Furthermore, the regulatory enzymes of many RNA modifications have not yet been identified. Herein, we aimed to identify new molecular mechanisms involved in RNA modification by focusing on the AlkB homolog (ALKBH) family molecules, a family of RNA demethylases. We demonstrated that ALKBH4 interacts with small RNA, regulating the formation and metabolism of the (R)-5-carboxyhydroxymethyl uridine methyl ester. We also found that the reaction of ALKBH4 with small RNA enhances protein translation efficiency in an in vitro assay system. These findings indicate that ALKBH4 is involved in the regulation of uridine modification and expand on the role of tRNA-mediated translation control through ALKBH4. American Society for Biochemistry and Molecular Biology 2023-07-26 /pmc/articles/PMC10465949/ /pubmed/37507018 http://dx.doi.org/10.1016/j.jbc.2023.105093 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Kogaki, Takahiro
Hase, Hiroaki
Tanimoto, Masaya
Tashiro, Atyuya
Kitae, Kaori
Ueda, Yuko
Jingushi, Kentaro
Tsujikawa, Kazutake
ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title_full ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title_fullStr ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title_full_unstemmed ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title_short ALKBH4 is a novel enzyme that promotes translation through modified uridine regulation
title_sort alkbh4 is a novel enzyme that promotes translation through modified uridine regulation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10465949/
https://www.ncbi.nlm.nih.gov/pubmed/37507018
http://dx.doi.org/10.1016/j.jbc.2023.105093
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