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Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer

BACKGROUND: A novel form of cell death termed cuproptosis was proposed recently. miRNAs play important roles in colorectal cancer (CRC). However, their relationships have not been reported. METHODS: miRNAs that negatively regulate 16 cuproptosis regulators were predicted using Targetscan database. T...

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Autores principales: Zhu, Zhonglin, Guo, Tianan, Weng, Junyong, Li, Shanbao, Zhu, Congcong, Zhao, Qiuyan, Xu, Ye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469834/
https://www.ncbi.nlm.nih.gov/pubmed/37334893
http://dx.doi.org/10.1002/cam4.6270
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author Zhu, Zhonglin
Guo, Tianan
Weng, Junyong
Li, Shanbao
Zhu, Congcong
Zhao, Qiuyan
Xu, Ye
author_facet Zhu, Zhonglin
Guo, Tianan
Weng, Junyong
Li, Shanbao
Zhu, Congcong
Zhao, Qiuyan
Xu, Ye
author_sort Zhu, Zhonglin
collection PubMed
description BACKGROUND: A novel form of cell death termed cuproptosis was proposed recently. miRNAs play important roles in colorectal cancer (CRC). However, their relationships have not been reported. METHODS: miRNAs that negatively regulate 16 cuproptosis regulators were predicted using Targetscan database. The univariate Cox, LASSO, and multivariate Cox regression analyses were performed to select cuproptosis‐related miRNAs. GSEA and ssGSEA analysis was carried out for functional enrichment analysis. The immune cell proportion score (IPS) and the efficiencies of multiple chemotherapy drugs were compared between different risk groups. The CCK8, cell colony, edu, and flow cytometry assays were performed to validate the roles of miRNA. Luciferase reporter assay confirmed the regulatory mechanism of miRNA on cuproptosis. RESULTS: Six cuproptosis‐related miRNAs (hsa‐miR‐653, hsa‐miR‐216a, hsa‐miR‐3684, hsa‐miR‐4437, hsa‐miR‐641, and hsa‐miR‐552) were screened out for model construction. The risk score could act as an independent prognostic indicator in CRC (p < 0.001, 95% HR = 1.243 (1.129–1.369)). The nomogram could efficiently predict the overall survival rate (AUC = 0.836). Then, the level of immunosuppressive pathways, immunosuppressive cells, stromal‐activated genes, and stromal score was higher in the high‐risk group. The IPS analysis showed a better response to immunotherapy in the low‐risk group. Also, the risk score was closely correlated with efficiencies of multiple chemotherapy drugs. Furthermore, miR‐653 was highly expressed in CRC tissues (p < 0.001), closely correlated with T stage (p < 0.001), metastasis (p < 0.001), and tumor stage (p < 0.001). High expression of miR‐653 predicted a shorter overall survival (p = 0.0282) and disease‐free survival (p = 0.0056). In addition, miR‐653 promoted cell proliferation, inhibited apoptosis, and negatively regulated the expression of DLD through directly binding to the 3’‐UTR of DLD mRNA. CONCLUSION: We constructed a cuproptosis‐related miRNA signature for the prediction of CRC patient survival and immunotherapy sensitivity. miR‐653 was highly expressed in CRC tissues, promoted cell proliferation, and inhibited apoptosis by negatively regulating the expression of DLD.
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spelling pubmed-104698342023-09-01 Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer Zhu, Zhonglin Guo, Tianan Weng, Junyong Li, Shanbao Zhu, Congcong Zhao, Qiuyan Xu, Ye Cancer Med Research Articles BACKGROUND: A novel form of cell death termed cuproptosis was proposed recently. miRNAs play important roles in colorectal cancer (CRC). However, their relationships have not been reported. METHODS: miRNAs that negatively regulate 16 cuproptosis regulators were predicted using Targetscan database. The univariate Cox, LASSO, and multivariate Cox regression analyses were performed to select cuproptosis‐related miRNAs. GSEA and ssGSEA analysis was carried out for functional enrichment analysis. The immune cell proportion score (IPS) and the efficiencies of multiple chemotherapy drugs were compared between different risk groups. The CCK8, cell colony, edu, and flow cytometry assays were performed to validate the roles of miRNA. Luciferase reporter assay confirmed the regulatory mechanism of miRNA on cuproptosis. RESULTS: Six cuproptosis‐related miRNAs (hsa‐miR‐653, hsa‐miR‐216a, hsa‐miR‐3684, hsa‐miR‐4437, hsa‐miR‐641, and hsa‐miR‐552) were screened out for model construction. The risk score could act as an independent prognostic indicator in CRC (p < 0.001, 95% HR = 1.243 (1.129–1.369)). The nomogram could efficiently predict the overall survival rate (AUC = 0.836). Then, the level of immunosuppressive pathways, immunosuppressive cells, stromal‐activated genes, and stromal score was higher in the high‐risk group. The IPS analysis showed a better response to immunotherapy in the low‐risk group. Also, the risk score was closely correlated with efficiencies of multiple chemotherapy drugs. Furthermore, miR‐653 was highly expressed in CRC tissues (p < 0.001), closely correlated with T stage (p < 0.001), metastasis (p < 0.001), and tumor stage (p < 0.001). High expression of miR‐653 predicted a shorter overall survival (p = 0.0282) and disease‐free survival (p = 0.0056). In addition, miR‐653 promoted cell proliferation, inhibited apoptosis, and negatively regulated the expression of DLD through directly binding to the 3’‐UTR of DLD mRNA. CONCLUSION: We constructed a cuproptosis‐related miRNA signature for the prediction of CRC patient survival and immunotherapy sensitivity. miR‐653 was highly expressed in CRC tissues, promoted cell proliferation, and inhibited apoptosis by negatively regulating the expression of DLD. John Wiley and Sons Inc. 2023-06-19 /pmc/articles/PMC10469834/ /pubmed/37334893 http://dx.doi.org/10.1002/cam4.6270 Text en © 2023 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Zhu, Zhonglin
Guo, Tianan
Weng, Junyong
Li, Shanbao
Zhu, Congcong
Zhao, Qiuyan
Xu, Ye
Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title_full Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title_fullStr Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title_full_unstemmed Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title_short Cuproptosis‐related miRNAs signature and immune infiltration characteristics in colorectal cancer
title_sort cuproptosis‐related mirnas signature and immune infiltration characteristics in colorectal cancer
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469834/
https://www.ncbi.nlm.nih.gov/pubmed/37334893
http://dx.doi.org/10.1002/cam4.6270
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