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A systematic in silico report on iron and zinc proteome of Zea mays

Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeop...

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Autores principales: Sharma, Ankita, Sharma, Dixit, Verma, Shailender Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469895/
https://www.ncbi.nlm.nih.gov/pubmed/37662157
http://dx.doi.org/10.3389/fpls.2023.1166720
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author Sharma, Ankita
Sharma, Dixit
Verma, Shailender Kumar
author_facet Sharma, Ankita
Sharma, Dixit
Verma, Shailender Kumar
author_sort Sharma, Ankita
collection PubMed
description Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeopardizes economic development. In the present study, the systematic in silico approach has been used to predict Fe and Zn binding proteins from the whole proteome of maize. A total of 356 and 546 putative proteins have been predicted, which contain sequence and structural motifs for Fe and Zn ions, respectively. Furthermore, the functional annotation of these predicted proteins, based on their domains, subcellular localization, gene ontology, and literature support, showed their roles in distinct cellular and biological processes, such as metabolism, gene expression and regulation, transport, stress response, protein folding, and proteolysis. The versatile roles of these shortlisted putative Fe and Zn binding proteins of maize could be used to manipulate many facets of maize physiology. Moreover, in the future, the predicted Fe and Zn binding proteins may act as relevant, novel, and economical markers for various crop improvement programs.
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spelling pubmed-104698952023-09-01 A systematic in silico report on iron and zinc proteome of Zea mays Sharma, Ankita Sharma, Dixit Verma, Shailender Kumar Front Plant Sci Plant Science Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeopardizes economic development. In the present study, the systematic in silico approach has been used to predict Fe and Zn binding proteins from the whole proteome of maize. A total of 356 and 546 putative proteins have been predicted, which contain sequence and structural motifs for Fe and Zn ions, respectively. Furthermore, the functional annotation of these predicted proteins, based on their domains, subcellular localization, gene ontology, and literature support, showed their roles in distinct cellular and biological processes, such as metabolism, gene expression and regulation, transport, stress response, protein folding, and proteolysis. The versatile roles of these shortlisted putative Fe and Zn binding proteins of maize could be used to manipulate many facets of maize physiology. Moreover, in the future, the predicted Fe and Zn binding proteins may act as relevant, novel, and economical markers for various crop improvement programs. Frontiers Media S.A. 2023-08-17 /pmc/articles/PMC10469895/ /pubmed/37662157 http://dx.doi.org/10.3389/fpls.2023.1166720 Text en Copyright © 2023 Sharma, Sharma and Verma https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Sharma, Ankita
Sharma, Dixit
Verma, Shailender Kumar
A systematic in silico report on iron and zinc proteome of Zea mays
title A systematic in silico report on iron and zinc proteome of Zea mays
title_full A systematic in silico report on iron and zinc proteome of Zea mays
title_fullStr A systematic in silico report on iron and zinc proteome of Zea mays
title_full_unstemmed A systematic in silico report on iron and zinc proteome of Zea mays
title_short A systematic in silico report on iron and zinc proteome of Zea mays
title_sort systematic in silico report on iron and zinc proteome of zea mays
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469895/
https://www.ncbi.nlm.nih.gov/pubmed/37662157
http://dx.doi.org/10.3389/fpls.2023.1166720
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