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A systematic in silico report on iron and zinc proteome of Zea mays
Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeop...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469895/ https://www.ncbi.nlm.nih.gov/pubmed/37662157 http://dx.doi.org/10.3389/fpls.2023.1166720 |
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author | Sharma, Ankita Sharma, Dixit Verma, Shailender Kumar |
author_facet | Sharma, Ankita Sharma, Dixit Verma, Shailender Kumar |
author_sort | Sharma, Ankita |
collection | PubMed |
description | Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeopardizes economic development. In the present study, the systematic in silico approach has been used to predict Fe and Zn binding proteins from the whole proteome of maize. A total of 356 and 546 putative proteins have been predicted, which contain sequence and structural motifs for Fe and Zn ions, respectively. Furthermore, the functional annotation of these predicted proteins, based on their domains, subcellular localization, gene ontology, and literature support, showed their roles in distinct cellular and biological processes, such as metabolism, gene expression and regulation, transport, stress response, protein folding, and proteolysis. The versatile roles of these shortlisted putative Fe and Zn binding proteins of maize could be used to manipulate many facets of maize physiology. Moreover, in the future, the predicted Fe and Zn binding proteins may act as relevant, novel, and economical markers for various crop improvement programs. |
format | Online Article Text |
id | pubmed-10469895 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104698952023-09-01 A systematic in silico report on iron and zinc proteome of Zea mays Sharma, Ankita Sharma, Dixit Verma, Shailender Kumar Front Plant Sci Plant Science Zea mays is an essential staple food crop across the globe. Maize contains macro and micronutrients but is limited in essential mineral micronutrients such as Fe and Zn. Worldwide, serious health concerns have risen due to the deficiencies of essential nutrients in human diets, which rigorously jeopardizes economic development. In the present study, the systematic in silico approach has been used to predict Fe and Zn binding proteins from the whole proteome of maize. A total of 356 and 546 putative proteins have been predicted, which contain sequence and structural motifs for Fe and Zn ions, respectively. Furthermore, the functional annotation of these predicted proteins, based on their domains, subcellular localization, gene ontology, and literature support, showed their roles in distinct cellular and biological processes, such as metabolism, gene expression and regulation, transport, stress response, protein folding, and proteolysis. The versatile roles of these shortlisted putative Fe and Zn binding proteins of maize could be used to manipulate many facets of maize physiology. Moreover, in the future, the predicted Fe and Zn binding proteins may act as relevant, novel, and economical markers for various crop improvement programs. Frontiers Media S.A. 2023-08-17 /pmc/articles/PMC10469895/ /pubmed/37662157 http://dx.doi.org/10.3389/fpls.2023.1166720 Text en Copyright © 2023 Sharma, Sharma and Verma https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Sharma, Ankita Sharma, Dixit Verma, Shailender Kumar A systematic in silico report on iron and zinc proteome of Zea mays |
title | A systematic in silico report on iron and zinc proteome of Zea mays
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title_full | A systematic in silico report on iron and zinc proteome of Zea mays
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title_fullStr | A systematic in silico report on iron and zinc proteome of Zea mays
|
title_full_unstemmed | A systematic in silico report on iron and zinc proteome of Zea mays
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title_short | A systematic in silico report on iron and zinc proteome of Zea mays
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title_sort | systematic in silico report on iron and zinc proteome of zea mays |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469895/ https://www.ncbi.nlm.nih.gov/pubmed/37662157 http://dx.doi.org/10.3389/fpls.2023.1166720 |
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