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Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma

BACKGROUND: Absent in melanoma 1-like (AIM1L), also known as crystalline beta gamma domain containing 2. The relationship between AIM1L and tumors has not been fully investigated, and the biological function of AIM1L in different tumors is unknown, so we bioinformatically explored a possible relatio...

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Autores principales: Zhou, Lu, Gan, Lanlan, Liu, Zongwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10470706/
https://www.ncbi.nlm.nih.gov/pubmed/37653730
http://dx.doi.org/10.1097/MD.0000000000034677
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author Zhou, Lu
Gan, Lanlan
Liu, Zongwen
author_facet Zhou, Lu
Gan, Lanlan
Liu, Zongwen
author_sort Zhou, Lu
collection PubMed
description BACKGROUND: Absent in melanoma 1-like (AIM1L), also known as crystalline beta gamma domain containing 2. The relationship between AIM1L and tumors has not been fully investigated, and the biological function of AIM1L in different tumors is unknown, so we bioinformatically explored a possible relationship between AIM1L and esophageal squamous cell carcinoma (ESCC). METHODS: AIM1L mRNA expression was detected by the Gene Expression Omnibus database (GSE20347, GSE161533, and GSE53625), and protein level expression was detected by immunohistochemistry. The correlation between AIM1L expression and clinical pathological characteristics was evaluated by the Wilcoxon signed rank test or chi-square test. Kaplan–Meier analysis and Cox proportional risk regression model were used to determine the prognostic value of AIM1L in ESCC patients and establish and verify a nomogram. Find genes highly related to the expression of AIM1L, conduct GO and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis, and conduct GSEA analysis on the gene set. The “CIBERSORT” R package was used to explore the relationship between AIM1L and immune infiltration, and the “OncoPredict” R package was used to explore the relationship between AIM1L and drug sensitivity. RESULTS: Compared with the matched adjacent non-cancer tissues, the expression of AIM1L was down-regulated in ESCC tissues, and correlated with tumor grade. Kaplan–Meier survival analysis and Cox analysis showed that the low expression of AIM1L was related to the poor prognosis of ESCC patients. Enrichment analysis explained the possible function of AIM1L, GSEA determined the highly correlated signal pathway of AIM1L low expression phenotype, immune infiltration analysis determined that AIM1L was related to activated NK cells and macrophage M2, and drug sensitivity analysis determined that the low expression of AIM1L might be related to EGFR targeted drug resistance. CONCLUSION: AIM1L may be a candidate tumor suppressor gene for ESCC and an independent molecular biomarker for the prognosis of ESCC patients.
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spelling pubmed-104707062023-09-01 Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma Zhou, Lu Gan, Lanlan Liu, Zongwen Medicine (Baltimore) 5700 BACKGROUND: Absent in melanoma 1-like (AIM1L), also known as crystalline beta gamma domain containing 2. The relationship between AIM1L and tumors has not been fully investigated, and the biological function of AIM1L in different tumors is unknown, so we bioinformatically explored a possible relationship between AIM1L and esophageal squamous cell carcinoma (ESCC). METHODS: AIM1L mRNA expression was detected by the Gene Expression Omnibus database (GSE20347, GSE161533, and GSE53625), and protein level expression was detected by immunohistochemistry. The correlation between AIM1L expression and clinical pathological characteristics was evaluated by the Wilcoxon signed rank test or chi-square test. Kaplan–Meier analysis and Cox proportional risk regression model were used to determine the prognostic value of AIM1L in ESCC patients and establish and verify a nomogram. Find genes highly related to the expression of AIM1L, conduct GO and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis, and conduct GSEA analysis on the gene set. The “CIBERSORT” R package was used to explore the relationship between AIM1L and immune infiltration, and the “OncoPredict” R package was used to explore the relationship between AIM1L and drug sensitivity. RESULTS: Compared with the matched adjacent non-cancer tissues, the expression of AIM1L was down-regulated in ESCC tissues, and correlated with tumor grade. Kaplan–Meier survival analysis and Cox analysis showed that the low expression of AIM1L was related to the poor prognosis of ESCC patients. Enrichment analysis explained the possible function of AIM1L, GSEA determined the highly correlated signal pathway of AIM1L low expression phenotype, immune infiltration analysis determined that AIM1L was related to activated NK cells and macrophage M2, and drug sensitivity analysis determined that the low expression of AIM1L might be related to EGFR targeted drug resistance. CONCLUSION: AIM1L may be a candidate tumor suppressor gene for ESCC and an independent molecular biomarker for the prognosis of ESCC patients. Lippincott Williams & Wilkins 2023-08-25 /pmc/articles/PMC10470706/ /pubmed/37653730 http://dx.doi.org/10.1097/MD.0000000000034677 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Zhou, Lu
Gan, Lanlan
Liu, Zongwen
Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title_full Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title_fullStr Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title_full_unstemmed Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title_short Expression and prognostic value of AIM1L in esophageal squamous cell carcinoma
title_sort expression and prognostic value of aim1l in esophageal squamous cell carcinoma
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10470706/
https://www.ncbi.nlm.nih.gov/pubmed/37653730
http://dx.doi.org/10.1097/MD.0000000000034677
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