Cargando…

The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer

PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patien...

Descripción completa

Detalles Bibliográficos
Autores principales: Choudhury, Noura J., Lavery, Jessica A., Brown, Samantha, de Bruijn, Ino, Jee, Justin, Tran, Thinh Ngoc, Rizvi, Hira, Arbour, Kathryn C., Whiting, Karissa, Shen, Ronglai, Hellmann, Matthew, Bedard, Philippe L., Yu, Celeste, Leighl, Natasha, LeNoue-Newton, Michele, Micheel, Christine, Warner, Jeremy L., Ginsberg, Michelle S., Plodkowski, Andrew, Girshman, Jeffrey, Sawan, Peter, Pillai, Shirin, Sweeney, Shawn M., Kehl, Kenneth L., Panageas, Katherine S., Schultz, Nikolaus, Schrag, Deborah, Riely, Gregory J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for Cancer Research 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10472103/
https://www.ncbi.nlm.nih.gov/pubmed/37223888
http://dx.doi.org/10.1158/1078-0432.CCR-23-0580
_version_ 1785100002761113600
author Choudhury, Noura J.
Lavery, Jessica A.
Brown, Samantha
de Bruijn, Ino
Jee, Justin
Tran, Thinh Ngoc
Rizvi, Hira
Arbour, Kathryn C.
Whiting, Karissa
Shen, Ronglai
Hellmann, Matthew
Bedard, Philippe L.
Yu, Celeste
Leighl, Natasha
LeNoue-Newton, Michele
Micheel, Christine
Warner, Jeremy L.
Ginsberg, Michelle S.
Plodkowski, Andrew
Girshman, Jeffrey
Sawan, Peter
Pillai, Shirin
Sweeney, Shawn M.
Kehl, Kenneth L.
Panageas, Katherine S.
Schultz, Nikolaus
Schrag, Deborah
Riely, Gregory J.
author_facet Choudhury, Noura J.
Lavery, Jessica A.
Brown, Samantha
de Bruijn, Ino
Jee, Justin
Tran, Thinh Ngoc
Rizvi, Hira
Arbour, Kathryn C.
Whiting, Karissa
Shen, Ronglai
Hellmann, Matthew
Bedard, Philippe L.
Yu, Celeste
Leighl, Natasha
LeNoue-Newton, Michele
Micheel, Christine
Warner, Jeremy L.
Ginsberg, Michelle S.
Plodkowski, Andrew
Girshman, Jeffrey
Sawan, Peter
Pillai, Shirin
Sweeney, Shawn M.
Kehl, Kenneth L.
Panageas, Katherine S.
Schultz, Nikolaus
Schrag, Deborah
Riely, Gregory J.
author_sort Choudhury, Noura J.
collection PubMed
description PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patients with NSCLC whose tumors were sequenced from 2014 to 2018 at four institutions participating in AACR GENIE were randomly chosen for curation using the PRISSMM data model. Progression-free survival (PFS) and overall survival (OS) were estimated for patients treated with standard therapies. RESULTS: In this cohort, 44% of tumors harbored a targetable oncogenic alteration, with EGFR (20%), KRAS G12C (13%), and oncogenic fusions (ALK, RET, and ROS1; 5%) as the most frequent. Median OS (mOS) on first-line platinum-based therapy without immunotherapy was 17.4 months [95% confidence interval (CI), 14.9–19.5 months]. For second-line therapies, mOS was 9.2 months (95% CI, 7.5–11.3 months) for immune checkpoint inhibitors (ICI) and 6.4 months (95% CI, 5.1–8.1 months) for docetaxel ± ramucirumab. In a subset of patients treated with ICI in the second-line or later setting, median RECIST PFS (2.5 months; 95% CI, 2.2–2.8) and median real-world PFS based on imaging reports (2.2 months; 95% CI, 1.7–2.6) were similar. In exploratory analysis of the impact of tumor mutational burden (TMB) on survival on ICI treatment in the second-line or higher setting, TMB z-score harmonized across gene panels was associated with improved OS (univariable HR, 0.85; P = 0.03; n = 247 patients). CONCLUSIONS: The GENIE BPC cohort provides comprehensive clinicogenomic data for patients with NSCLC, which can improve understanding of real-world patient outcomes.
format Online
Article
Text
id pubmed-10472103
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Association for Cancer Research
record_format MEDLINE/PubMed
spelling pubmed-104721032023-09-02 The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer Choudhury, Noura J. Lavery, Jessica A. Brown, Samantha de Bruijn, Ino Jee, Justin Tran, Thinh Ngoc Rizvi, Hira Arbour, Kathryn C. Whiting, Karissa Shen, Ronglai Hellmann, Matthew Bedard, Philippe L. Yu, Celeste Leighl, Natasha LeNoue-Newton, Michele Micheel, Christine Warner, Jeremy L. Ginsberg, Michelle S. Plodkowski, Andrew Girshman, Jeffrey Sawan, Peter Pillai, Shirin Sweeney, Shawn M. Kehl, Kenneth L. Panageas, Katherine S. Schultz, Nikolaus Schrag, Deborah Riely, Gregory J. Clin Cancer Res Translational Cancer Mechanisms and Therapy PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patients with NSCLC whose tumors were sequenced from 2014 to 2018 at four institutions participating in AACR GENIE were randomly chosen for curation using the PRISSMM data model. Progression-free survival (PFS) and overall survival (OS) were estimated for patients treated with standard therapies. RESULTS: In this cohort, 44% of tumors harbored a targetable oncogenic alteration, with EGFR (20%), KRAS G12C (13%), and oncogenic fusions (ALK, RET, and ROS1; 5%) as the most frequent. Median OS (mOS) on first-line platinum-based therapy without immunotherapy was 17.4 months [95% confidence interval (CI), 14.9–19.5 months]. For second-line therapies, mOS was 9.2 months (95% CI, 7.5–11.3 months) for immune checkpoint inhibitors (ICI) and 6.4 months (95% CI, 5.1–8.1 months) for docetaxel ± ramucirumab. In a subset of patients treated with ICI in the second-line or later setting, median RECIST PFS (2.5 months; 95% CI, 2.2–2.8) and median real-world PFS based on imaging reports (2.2 months; 95% CI, 1.7–2.6) were similar. In exploratory analysis of the impact of tumor mutational burden (TMB) on survival on ICI treatment in the second-line or higher setting, TMB z-score harmonized across gene panels was associated with improved OS (univariable HR, 0.85; P = 0.03; n = 247 patients). CONCLUSIONS: The GENIE BPC cohort provides comprehensive clinicogenomic data for patients with NSCLC, which can improve understanding of real-world patient outcomes. American Association for Cancer Research 2023-09-01 2023-05-24 /pmc/articles/PMC10472103/ /pubmed/37223888 http://dx.doi.org/10.1158/1078-0432.CCR-23-0580 Text en ©2023 The Authors; Published by the American Association for Cancer Research https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license.
spellingShingle Translational Cancer Mechanisms and Therapy
Choudhury, Noura J.
Lavery, Jessica A.
Brown, Samantha
de Bruijn, Ino
Jee, Justin
Tran, Thinh Ngoc
Rizvi, Hira
Arbour, Kathryn C.
Whiting, Karissa
Shen, Ronglai
Hellmann, Matthew
Bedard, Philippe L.
Yu, Celeste
Leighl, Natasha
LeNoue-Newton, Michele
Micheel, Christine
Warner, Jeremy L.
Ginsberg, Michelle S.
Plodkowski, Andrew
Girshman, Jeffrey
Sawan, Peter
Pillai, Shirin
Sweeney, Shawn M.
Kehl, Kenneth L.
Panageas, Katherine S.
Schultz, Nikolaus
Schrag, Deborah
Riely, Gregory J.
The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title_full The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title_fullStr The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title_full_unstemmed The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title_short The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
title_sort genie bpc nsclc cohort: a real-world repository integrating standardized clinical and genomic data for 1,846 patients with non–small cell lung cancer
topic Translational Cancer Mechanisms and Therapy
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10472103/
https://www.ncbi.nlm.nih.gov/pubmed/37223888
http://dx.doi.org/10.1158/1078-0432.CCR-23-0580
work_keys_str_mv AT choudhurynouraj thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT laveryjessicaa thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT brownsamantha thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT debruijnino thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT jeejustin thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT tranthinhngoc thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT rizvihira thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT arbourkathrync thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT whitingkarissa thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT shenronglai thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT hellmannmatthew thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT bedardphilippel thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT yuceleste thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT leighlnatasha thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT lenouenewtonmichele thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT micheelchristine thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT warnerjeremyl thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT ginsbergmichelles thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT plodkowskiandrew thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT girshmanjeffrey thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT sawanpeter thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT pillaishirin thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT sweeneyshawnm thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT kehlkennethl thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT panageaskatherines thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT schultznikolaus thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT schragdeborah thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT rielygregoryj thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT choudhurynouraj geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT laveryjessicaa geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT brownsamantha geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT debruijnino geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT jeejustin geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT tranthinhngoc geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT rizvihira geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT arbourkathrync geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT whitingkarissa geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT shenronglai geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT hellmannmatthew geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT bedardphilippel geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT yuceleste geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT leighlnatasha geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT lenouenewtonmichele geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT micheelchristine geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT warnerjeremyl geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT ginsbergmichelles geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT plodkowskiandrew geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT girshmanjeffrey geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT sawanpeter geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT pillaishirin geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT sweeneyshawnm geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT kehlkennethl geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT panageaskatherines geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT schultznikolaus geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT schragdeborah geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT rielygregoryj geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer
AT geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer