Cargando…
The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patien...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for Cancer Research
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10472103/ https://www.ncbi.nlm.nih.gov/pubmed/37223888 http://dx.doi.org/10.1158/1078-0432.CCR-23-0580 |
_version_ | 1785100002761113600 |
---|---|
author | Choudhury, Noura J. Lavery, Jessica A. Brown, Samantha de Bruijn, Ino Jee, Justin Tran, Thinh Ngoc Rizvi, Hira Arbour, Kathryn C. Whiting, Karissa Shen, Ronglai Hellmann, Matthew Bedard, Philippe L. Yu, Celeste Leighl, Natasha LeNoue-Newton, Michele Micheel, Christine Warner, Jeremy L. Ginsberg, Michelle S. Plodkowski, Andrew Girshman, Jeffrey Sawan, Peter Pillai, Shirin Sweeney, Shawn M. Kehl, Kenneth L. Panageas, Katherine S. Schultz, Nikolaus Schrag, Deborah Riely, Gregory J. |
author_facet | Choudhury, Noura J. Lavery, Jessica A. Brown, Samantha de Bruijn, Ino Jee, Justin Tran, Thinh Ngoc Rizvi, Hira Arbour, Kathryn C. Whiting, Karissa Shen, Ronglai Hellmann, Matthew Bedard, Philippe L. Yu, Celeste Leighl, Natasha LeNoue-Newton, Michele Micheel, Christine Warner, Jeremy L. Ginsberg, Michelle S. Plodkowski, Andrew Girshman, Jeffrey Sawan, Peter Pillai, Shirin Sweeney, Shawn M. Kehl, Kenneth L. Panageas, Katherine S. Schultz, Nikolaus Schrag, Deborah Riely, Gregory J. |
author_sort | Choudhury, Noura J. |
collection | PubMed |
description | PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patients with NSCLC whose tumors were sequenced from 2014 to 2018 at four institutions participating in AACR GENIE were randomly chosen for curation using the PRISSMM data model. Progression-free survival (PFS) and overall survival (OS) were estimated for patients treated with standard therapies. RESULTS: In this cohort, 44% of tumors harbored a targetable oncogenic alteration, with EGFR (20%), KRAS G12C (13%), and oncogenic fusions (ALK, RET, and ROS1; 5%) as the most frequent. Median OS (mOS) on first-line platinum-based therapy without immunotherapy was 17.4 months [95% confidence interval (CI), 14.9–19.5 months]. For second-line therapies, mOS was 9.2 months (95% CI, 7.5–11.3 months) for immune checkpoint inhibitors (ICI) and 6.4 months (95% CI, 5.1–8.1 months) for docetaxel ± ramucirumab. In a subset of patients treated with ICI in the second-line or later setting, median RECIST PFS (2.5 months; 95% CI, 2.2–2.8) and median real-world PFS based on imaging reports (2.2 months; 95% CI, 1.7–2.6) were similar. In exploratory analysis of the impact of tumor mutational burden (TMB) on survival on ICI treatment in the second-line or higher setting, TMB z-score harmonized across gene panels was associated with improved OS (univariable HR, 0.85; P = 0.03; n = 247 patients). CONCLUSIONS: The GENIE BPC cohort provides comprehensive clinicogenomic data for patients with NSCLC, which can improve understanding of real-world patient outcomes. |
format | Online Article Text |
id | pubmed-10472103 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Association for Cancer Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-104721032023-09-02 The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer Choudhury, Noura J. Lavery, Jessica A. Brown, Samantha de Bruijn, Ino Jee, Justin Tran, Thinh Ngoc Rizvi, Hira Arbour, Kathryn C. Whiting, Karissa Shen, Ronglai Hellmann, Matthew Bedard, Philippe L. Yu, Celeste Leighl, Natasha LeNoue-Newton, Michele Micheel, Christine Warner, Jeremy L. Ginsberg, Michelle S. Plodkowski, Andrew Girshman, Jeffrey Sawan, Peter Pillai, Shirin Sweeney, Shawn M. Kehl, Kenneth L. Panageas, Katherine S. Schultz, Nikolaus Schrag, Deborah Riely, Gregory J. Clin Cancer Res Translational Cancer Mechanisms and Therapy PURPOSE: We describe the clinical and genomic landscape of the non–small cell lung cancer (NSCLC) cohort of the American Association for Cancer Research (AACR) Project Genomics Evidence Neoplasia Information Exchange (GENIE) Biopharma Collaborative (BPC). EXPERIMENTAL DESIGN: A total of 1,846 patients with NSCLC whose tumors were sequenced from 2014 to 2018 at four institutions participating in AACR GENIE were randomly chosen for curation using the PRISSMM data model. Progression-free survival (PFS) and overall survival (OS) were estimated for patients treated with standard therapies. RESULTS: In this cohort, 44% of tumors harbored a targetable oncogenic alteration, with EGFR (20%), KRAS G12C (13%), and oncogenic fusions (ALK, RET, and ROS1; 5%) as the most frequent. Median OS (mOS) on first-line platinum-based therapy without immunotherapy was 17.4 months [95% confidence interval (CI), 14.9–19.5 months]. For second-line therapies, mOS was 9.2 months (95% CI, 7.5–11.3 months) for immune checkpoint inhibitors (ICI) and 6.4 months (95% CI, 5.1–8.1 months) for docetaxel ± ramucirumab. In a subset of patients treated with ICI in the second-line or later setting, median RECIST PFS (2.5 months; 95% CI, 2.2–2.8) and median real-world PFS based on imaging reports (2.2 months; 95% CI, 1.7–2.6) were similar. In exploratory analysis of the impact of tumor mutational burden (TMB) on survival on ICI treatment in the second-line or higher setting, TMB z-score harmonized across gene panels was associated with improved OS (univariable HR, 0.85; P = 0.03; n = 247 patients). CONCLUSIONS: The GENIE BPC cohort provides comprehensive clinicogenomic data for patients with NSCLC, which can improve understanding of real-world patient outcomes. American Association for Cancer Research 2023-09-01 2023-05-24 /pmc/articles/PMC10472103/ /pubmed/37223888 http://dx.doi.org/10.1158/1078-0432.CCR-23-0580 Text en ©2023 The Authors; Published by the American Association for Cancer Research https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license. |
spellingShingle | Translational Cancer Mechanisms and Therapy Choudhury, Noura J. Lavery, Jessica A. Brown, Samantha de Bruijn, Ino Jee, Justin Tran, Thinh Ngoc Rizvi, Hira Arbour, Kathryn C. Whiting, Karissa Shen, Ronglai Hellmann, Matthew Bedard, Philippe L. Yu, Celeste Leighl, Natasha LeNoue-Newton, Michele Micheel, Christine Warner, Jeremy L. Ginsberg, Michelle S. Plodkowski, Andrew Girshman, Jeffrey Sawan, Peter Pillai, Shirin Sweeney, Shawn M. Kehl, Kenneth L. Panageas, Katherine S. Schultz, Nikolaus Schrag, Deborah Riely, Gregory J. The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title | The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title_full | The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title_fullStr | The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title_full_unstemmed | The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title_short | The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer |
title_sort | genie bpc nsclc cohort: a real-world repository integrating standardized clinical and genomic data for 1,846 patients with non–small cell lung cancer |
topic | Translational Cancer Mechanisms and Therapy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10472103/ https://www.ncbi.nlm.nih.gov/pubmed/37223888 http://dx.doi.org/10.1158/1078-0432.CCR-23-0580 |
work_keys_str_mv | AT choudhurynouraj thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT laveryjessicaa thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT brownsamantha thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT debruijnino thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT jeejustin thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT tranthinhngoc thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT rizvihira thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT arbourkathrync thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT whitingkarissa thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT shenronglai thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT hellmannmatthew thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT bedardphilippel thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT yuceleste thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT leighlnatasha thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT lenouenewtonmichele thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT micheelchristine thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT warnerjeremyl thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT ginsbergmichelles thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT plodkowskiandrew thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT girshmanjeffrey thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT sawanpeter thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT pillaishirin thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT sweeneyshawnm thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT kehlkennethl thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT panageaskatherines thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT schultznikolaus thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT schragdeborah thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT rielygregoryj thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT thegeniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT choudhurynouraj geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT laveryjessicaa geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT brownsamantha geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT debruijnino geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT jeejustin geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT tranthinhngoc geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT rizvihira geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT arbourkathrync geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT whitingkarissa geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT shenronglai geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT hellmannmatthew geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT bedardphilippel geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT yuceleste geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT leighlnatasha geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT lenouenewtonmichele geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT micheelchristine geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT warnerjeremyl geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT ginsbergmichelles geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT plodkowskiandrew geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT girshmanjeffrey geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT sawanpeter geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT pillaishirin geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT sweeneyshawnm geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT kehlkennethl geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT panageaskatherines geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT schultznikolaus geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT schragdeborah geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT rielygregoryj geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer AT geniebpcnsclccohortarealworldrepositoryintegratingstandardizedclinicalandgenomicdatafor1846patientswithnonsmallcelllungcancer |