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Description length guided nonlinear unified Granger causality analysis
Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length prin...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473308/ https://www.ncbi.nlm.nih.gov/pubmed/37781142 http://dx.doi.org/10.1162/netn_a_00316 |
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author | Li, Fei Lin, Qiang Zhao, Xiaohu Hu, Zhenghui |
author_facet | Li, Fei Lin, Qiang Zhao, Xiaohu Hu, Zhenghui |
author_sort | Li, Fei |
collection | PubMed |
description | Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length principle. In this research, considering the common existence of nonlinearity in functional brain networks, we incorporated the nonlinear modeling procedure into the proposed uGCA method, in which an approximate representation of Taylor’s expansion was adopted. Through synthetic data experiments, we revealed that nonlinear uGCA was obviously superior to its linear representation and the conventional GCA. Meanwhile, the nonlinear characteristics of high-order terms and cross-terms would be successively drowned out as noise levels increased. Then, in real fMRI data involving mental arithmetic tasks, we further illustrated that these nonlinear characteristics in fMRI data may indeed be drowned out at a high noise level, and hence a linear causal analysis procedure may be sufficient. Next, involving autism spectrum disorder patients data, compared with conventional GCA, the network property of causal connections obtained by uGCA methods appeared to be more consistent with clinical symptoms. |
format | Online Article Text |
id | pubmed-10473308 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-104733082023-10-01 Description length guided nonlinear unified Granger causality analysis Li, Fei Lin, Qiang Zhao, Xiaohu Hu, Zhenghui Netw Neurosci Research Article Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length principle. In this research, considering the common existence of nonlinearity in functional brain networks, we incorporated the nonlinear modeling procedure into the proposed uGCA method, in which an approximate representation of Taylor’s expansion was adopted. Through synthetic data experiments, we revealed that nonlinear uGCA was obviously superior to its linear representation and the conventional GCA. Meanwhile, the nonlinear characteristics of high-order terms and cross-terms would be successively drowned out as noise levels increased. Then, in real fMRI data involving mental arithmetic tasks, we further illustrated that these nonlinear characteristics in fMRI data may indeed be drowned out at a high noise level, and hence a linear causal analysis procedure may be sufficient. Next, involving autism spectrum disorder patients data, compared with conventional GCA, the network property of causal connections obtained by uGCA methods appeared to be more consistent with clinical symptoms. MIT Press 2023-10-01 /pmc/articles/PMC10473308/ /pubmed/37781142 http://dx.doi.org/10.1162/netn_a_00316 Text en © 2023 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Research Article Li, Fei Lin, Qiang Zhao, Xiaohu Hu, Zhenghui Description length guided nonlinear unified Granger causality analysis |
title | Description length guided nonlinear unified Granger causality analysis |
title_full | Description length guided nonlinear unified Granger causality analysis |
title_fullStr | Description length guided nonlinear unified Granger causality analysis |
title_full_unstemmed | Description length guided nonlinear unified Granger causality analysis |
title_short | Description length guided nonlinear unified Granger causality analysis |
title_sort | description length guided nonlinear unified granger causality analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473308/ https://www.ncbi.nlm.nih.gov/pubmed/37781142 http://dx.doi.org/10.1162/netn_a_00316 |
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