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Description length guided nonlinear unified Granger causality analysis

Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length prin...

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Detalles Bibliográficos
Autores principales: Li, Fei, Lin, Qiang, Zhao, Xiaohu, Hu, Zhenghui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MIT Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473308/
https://www.ncbi.nlm.nih.gov/pubmed/37781142
http://dx.doi.org/10.1162/netn_a_00316
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author Li, Fei
Lin, Qiang
Zhao, Xiaohu
Hu, Zhenghui
author_facet Li, Fei
Lin, Qiang
Zhao, Xiaohu
Hu, Zhenghui
author_sort Li, Fei
collection PubMed
description Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length principle. In this research, considering the common existence of nonlinearity in functional brain networks, we incorporated the nonlinear modeling procedure into the proposed uGCA method, in which an approximate representation of Taylor’s expansion was adopted. Through synthetic data experiments, we revealed that nonlinear uGCA was obviously superior to its linear representation and the conventional GCA. Meanwhile, the nonlinear characteristics of high-order terms and cross-terms would be successively drowned out as noise levels increased. Then, in real fMRI data involving mental arithmetic tasks, we further illustrated that these nonlinear characteristics in fMRI data may indeed be drowned out at a high noise level, and hence a linear causal analysis procedure may be sufficient. Next, involving autism spectrum disorder patients data, compared with conventional GCA, the network property of causal connections obtained by uGCA methods appeared to be more consistent with clinical symptoms.
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spelling pubmed-104733082023-10-01 Description length guided nonlinear unified Granger causality analysis Li, Fei Lin, Qiang Zhao, Xiaohu Hu, Zhenghui Netw Neurosci Research Article Most Granger causality analysis (GCA) methods still remain a two-stage scheme guided by different mathematical theories; both can actually be viewed as the same generalized model selection issues. Adhering to Occam’s razor, we present a unified GCA (uGCA) based on the minimum description length principle. In this research, considering the common existence of nonlinearity in functional brain networks, we incorporated the nonlinear modeling procedure into the proposed uGCA method, in which an approximate representation of Taylor’s expansion was adopted. Through synthetic data experiments, we revealed that nonlinear uGCA was obviously superior to its linear representation and the conventional GCA. Meanwhile, the nonlinear characteristics of high-order terms and cross-terms would be successively drowned out as noise levels increased. Then, in real fMRI data involving mental arithmetic tasks, we further illustrated that these nonlinear characteristics in fMRI data may indeed be drowned out at a high noise level, and hence a linear causal analysis procedure may be sufficient. Next, involving autism spectrum disorder patients data, compared with conventional GCA, the network property of causal connections obtained by uGCA methods appeared to be more consistent with clinical symptoms. MIT Press 2023-10-01 /pmc/articles/PMC10473308/ /pubmed/37781142 http://dx.doi.org/10.1162/netn_a_00316 Text en © 2023 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/.
spellingShingle Research Article
Li, Fei
Lin, Qiang
Zhao, Xiaohu
Hu, Zhenghui
Description length guided nonlinear unified Granger causality analysis
title Description length guided nonlinear unified Granger causality analysis
title_full Description length guided nonlinear unified Granger causality analysis
title_fullStr Description length guided nonlinear unified Granger causality analysis
title_full_unstemmed Description length guided nonlinear unified Granger causality analysis
title_short Description length guided nonlinear unified Granger causality analysis
title_sort description length guided nonlinear unified granger causality analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473308/
https://www.ncbi.nlm.nih.gov/pubmed/37781142
http://dx.doi.org/10.1162/netn_a_00316
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