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REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition

Understanding the rich behavioral data generated by mice is essential for deciphering the function of the healthy and diseased brain. However, the current landscape lacks effective, affordable, and accessible methods for acquiring such data, especially when employing multiple cameras simultaneously....

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Detalles Bibliográficos
Autores principales: Phadke, Rhushikesh A., Wetzel, Austin M., Fournier, Luke A., Sha, Mingqi, Padró-Luna, Nicole M., Cruz-Martín, Alberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473639/
https://www.ncbi.nlm.nih.gov/pubmed/37662188
http://dx.doi.org/10.1101/2023.08.22.554365
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author Phadke, Rhushikesh A.
Wetzel, Austin M.
Fournier, Luke A.
Sha, Mingqi
Padró-Luna, Nicole M.
Cruz-Martín, Alberto
author_facet Phadke, Rhushikesh A.
Wetzel, Austin M.
Fournier, Luke A.
Sha, Mingqi
Padró-Luna, Nicole M.
Cruz-Martín, Alberto
author_sort Phadke, Rhushikesh A.
collection PubMed
description Understanding the rich behavioral data generated by mice is essential for deciphering the function of the healthy and diseased brain. However, the current landscape lacks effective, affordable, and accessible methods for acquiring such data, especially when employing multiple cameras simultaneously. We have developed REVEALS (Rodent BEhaVior Multi-camErA Laboratory AcquiSition), a graphical user interface (GUI) written in python for acquiring rodent behavioral data via commonly used USB3 cameras. REVEALS allows for user-friendly control of recording from one or multiple cameras simultaneously while streamlining the data acquisition process, enabling researchers to collect and analyze large datasets efficiently. We release this software package as a stand-alone, open-source framework for researchers to use and modify according to their needs. We describe the details of the GUI implementation, including the camera control software and the video recording functionality. We validate results demonstrating the GUI’s stability, reliability, and accuracy for capturing and analyzing rodent behavior using DeepLabCut pose estimation in both an object and social interaction assay. REVEALS can also be incorporated into other custom pipelines to analyze complex behavior, such as MoSeq. In summary, REVEALS provides an interface for collecting behavioral data from one or multiple perspectives that, combined with deep learning algorithms, will allow the scientific community to discover and characterize complex behavioral phenotypes to understand brain function better.
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spelling pubmed-104736392023-09-02 REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition Phadke, Rhushikesh A. Wetzel, Austin M. Fournier, Luke A. Sha, Mingqi Padró-Luna, Nicole M. Cruz-Martín, Alberto bioRxiv Article Understanding the rich behavioral data generated by mice is essential for deciphering the function of the healthy and diseased brain. However, the current landscape lacks effective, affordable, and accessible methods for acquiring such data, especially when employing multiple cameras simultaneously. We have developed REVEALS (Rodent BEhaVior Multi-camErA Laboratory AcquiSition), a graphical user interface (GUI) written in python for acquiring rodent behavioral data via commonly used USB3 cameras. REVEALS allows for user-friendly control of recording from one or multiple cameras simultaneously while streamlining the data acquisition process, enabling researchers to collect and analyze large datasets efficiently. We release this software package as a stand-alone, open-source framework for researchers to use and modify according to their needs. We describe the details of the GUI implementation, including the camera control software and the video recording functionality. We validate results demonstrating the GUI’s stability, reliability, and accuracy for capturing and analyzing rodent behavior using DeepLabCut pose estimation in both an object and social interaction assay. REVEALS can also be incorporated into other custom pipelines to analyze complex behavior, such as MoSeq. In summary, REVEALS provides an interface for collecting behavioral data from one or multiple perspectives that, combined with deep learning algorithms, will allow the scientific community to discover and characterize complex behavioral phenotypes to understand brain function better. Cold Spring Harbor Laboratory 2023-08-23 /pmc/articles/PMC10473639/ /pubmed/37662188 http://dx.doi.org/10.1101/2023.08.22.554365 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Phadke, Rhushikesh A.
Wetzel, Austin M.
Fournier, Luke A.
Sha, Mingqi
Padró-Luna, Nicole M.
Cruz-Martín, Alberto
REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title_full REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title_fullStr REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title_full_unstemmed REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title_short REVEALS: An Open Source Multi Camera GUI For Rodent Behavior Acquisition
title_sort reveals: an open source multi camera gui for rodent behavior acquisition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473639/
https://www.ncbi.nlm.nih.gov/pubmed/37662188
http://dx.doi.org/10.1101/2023.08.22.554365
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