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WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE
Obesity is a major public health crisis associated with high mortality rates. Previous genome-wide association studies (GWAS) investigating body mass index (BMI) have largely relied on imputed data from European individuals. This study leveraged whole-genome sequencing (WGS) data from 88,873 partici...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473809/ https://www.ncbi.nlm.nih.gov/pubmed/37662265 http://dx.doi.org/10.1101/2023.08.21.23293271 |
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author | Zhang, Xinruo Brody, Jennifer A. Graff, Mariaelisa Highland, Heather M. Chami, Nathalie Xu, Hanfei Wang, Zhe Ferrier, Kendra Chittoor, Geetha Josyula, Navya S. Li, Xihao Li, Zilin Allison, Matthew A. Becker, Diane M. Bielak, Lawrence F. Bis, Joshua C. Boorgula, Meher Preethi Bowden, Donald W. Broome, Jai G. Buth, Erin J. Carlson, Christopher S. Chang, Kyong-Mi Chavan, Sameer Chiu, Yen-Feng Chuang, Lee-Ming Conomos, Matthew P. DeMeo, Dawn L. Du, Margaret Duggirala, Ravindranath Eng, Celeste Fohner, Alison E. Freedman, Barry I. Garrett, Melanie E. Guo, Xiuqing Haiman, Chris Heavner, Benjamin D. Hidalgo, Bertha Hixson, James E. Ho, Yuk-Lam Hobbs, Brian D. Hu, Donglei Hui, Qin Hwu, Chii-Min Jackson, Rebecca D. Jain, Deepti Kalyani, Rita R. Kardia, Sharon L.R. Kelly, Tanika N. Lange, Ethan M. LeNoir, Michael Li, Changwei Marchand, Loic Le. McDonald, Merry-Lynn N. McHugh, Caitlin P. Morrison, Alanna C. Naseri, Take O’Connell, Jeffrey O’Donnell, Christopher J. Palmer, Nicholette D. Pankow, James S. Perry, James A. Peters, Ulrike Preuss, Michael H. Rao, D.C. Regan, Elizabeth A. Reupena, Sefuiva M. Roden, Dan M. Rodriguez-Santana, Jose Sitlani, Colleen M. Smith, Jennifer A. Tiwari, Hemant K. Vasan, Ramachandran S. Wang, Zeyuan Weeks, Daniel E. Wessel, Jennifer Wiggins, Kerri L. Wilkens, Lynne R. Wilson, Peter W.F. Yanek, Lisa R. Yoneda, Zachary T. Zhao, Wei Zöllner, Sebastian Arnett, Donna K. Ashley-Koch, Allison E. Barnes, Kathleen C. Blangero, John Boerwinkle, Eric Burchard, Esteban G. Carson, April P. Chasman, Daniel I. Chen, Yii-Der Ida Curran, Joanne E. Fornage, Myriam Gordeuk, Victor R. He, Jiang Heckbert, Susan R. Hou, Lifang Irvin, Marguerite R. Kooperberg, Charles Minster, Ryan L. Mitchell, Braxton D. Nouraie, Mehdi Psaty, Bruce M. Raffield, Laura M. Reiner, Alexander P. Rich, Stephen S. Rotter, Jerome I. Shoemaker, M. Benjamin Smith, Nicholas L. Taylor, Kent D. Telen, Marilyn J. Weiss, Scott T. Zhang, Yingze Heard-Costa, Nancy Sun, Yan V. Lin, Xihong Adrienne Cupples, L. Lange, Leslie A. Liu, Ching-Ti Loos, Ruth J.F. North, Kari E. Justice, Anne E. |
author_facet | Zhang, Xinruo Brody, Jennifer A. Graff, Mariaelisa Highland, Heather M. Chami, Nathalie Xu, Hanfei Wang, Zhe Ferrier, Kendra Chittoor, Geetha Josyula, Navya S. Li, Xihao Li, Zilin Allison, Matthew A. Becker, Diane M. Bielak, Lawrence F. Bis, Joshua C. Boorgula, Meher Preethi Bowden, Donald W. Broome, Jai G. Buth, Erin J. Carlson, Christopher S. Chang, Kyong-Mi Chavan, Sameer Chiu, Yen-Feng Chuang, Lee-Ming Conomos, Matthew P. DeMeo, Dawn L. Du, Margaret Duggirala, Ravindranath Eng, Celeste Fohner, Alison E. Freedman, Barry I. Garrett, Melanie E. Guo, Xiuqing Haiman, Chris Heavner, Benjamin D. Hidalgo, Bertha Hixson, James E. Ho, Yuk-Lam Hobbs, Brian D. Hu, Donglei Hui, Qin Hwu, Chii-Min Jackson, Rebecca D. Jain, Deepti Kalyani, Rita R. Kardia, Sharon L.R. Kelly, Tanika N. Lange, Ethan M. LeNoir, Michael Li, Changwei Marchand, Loic Le. McDonald, Merry-Lynn N. McHugh, Caitlin P. Morrison, Alanna C. Naseri, Take O’Connell, Jeffrey O’Donnell, Christopher J. Palmer, Nicholette D. Pankow, James S. Perry, James A. Peters, Ulrike Preuss, Michael H. Rao, D.C. Regan, Elizabeth A. Reupena, Sefuiva M. Roden, Dan M. Rodriguez-Santana, Jose Sitlani, Colleen M. Smith, Jennifer A. Tiwari, Hemant K. Vasan, Ramachandran S. Wang, Zeyuan Weeks, Daniel E. Wessel, Jennifer Wiggins, Kerri L. Wilkens, Lynne R. Wilson, Peter W.F. Yanek, Lisa R. Yoneda, Zachary T. Zhao, Wei Zöllner, Sebastian Arnett, Donna K. Ashley-Koch, Allison E. Barnes, Kathleen C. Blangero, John Boerwinkle, Eric Burchard, Esteban G. Carson, April P. Chasman, Daniel I. Chen, Yii-Der Ida Curran, Joanne E. Fornage, Myriam Gordeuk, Victor R. He, Jiang Heckbert, Susan R. Hou, Lifang Irvin, Marguerite R. Kooperberg, Charles Minster, Ryan L. Mitchell, Braxton D. Nouraie, Mehdi Psaty, Bruce M. Raffield, Laura M. Reiner, Alexander P. Rich, Stephen S. Rotter, Jerome I. Shoemaker, M. Benjamin Smith, Nicholas L. Taylor, Kent D. Telen, Marilyn J. Weiss, Scott T. Zhang, Yingze Heard-Costa, Nancy Sun, Yan V. Lin, Xihong Adrienne Cupples, L. Lange, Leslie A. Liu, Ching-Ti Loos, Ruth J.F. North, Kari E. Justice, Anne E. |
author_sort | Zhang, Xinruo |
collection | PubMed |
description | Obesity is a major public health crisis associated with high mortality rates. Previous genome-wide association studies (GWAS) investigating body mass index (BMI) have largely relied on imputed data from European individuals. This study leveraged whole-genome sequencing (WGS) data from 88,873 participants from the Trans-Omics for Precision Medicine (TOPMed) Program, of which 51% were of non-European population groups. We discovered 18 BMI-associated signals (P < 5 × 10(−9)). Notably, we identified and replicated a novel low frequency single nucleotide polymorphism (SNP) in MTMR3 that was common in individuals of African descent. Using a diverse study population, we further identified two novel secondary signals in known BMI loci and pinpointed two likely causal variants in the POC5 and DMD loci. Our work demonstrates the benefits of combining WGS and diverse cohorts in expanding current catalog of variants and genes confer risk for obesity, bringing us one step closer to personalized medicine. |
format | Online Article Text |
id | pubmed-10473809 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-104738092023-09-02 WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE Zhang, Xinruo Brody, Jennifer A. Graff, Mariaelisa Highland, Heather M. Chami, Nathalie Xu, Hanfei Wang, Zhe Ferrier, Kendra Chittoor, Geetha Josyula, Navya S. Li, Xihao Li, Zilin Allison, Matthew A. Becker, Diane M. Bielak, Lawrence F. Bis, Joshua C. Boorgula, Meher Preethi Bowden, Donald W. Broome, Jai G. Buth, Erin J. Carlson, Christopher S. Chang, Kyong-Mi Chavan, Sameer Chiu, Yen-Feng Chuang, Lee-Ming Conomos, Matthew P. DeMeo, Dawn L. Du, Margaret Duggirala, Ravindranath Eng, Celeste Fohner, Alison E. Freedman, Barry I. Garrett, Melanie E. Guo, Xiuqing Haiman, Chris Heavner, Benjamin D. Hidalgo, Bertha Hixson, James E. Ho, Yuk-Lam Hobbs, Brian D. Hu, Donglei Hui, Qin Hwu, Chii-Min Jackson, Rebecca D. Jain, Deepti Kalyani, Rita R. Kardia, Sharon L.R. Kelly, Tanika N. Lange, Ethan M. LeNoir, Michael Li, Changwei Marchand, Loic Le. McDonald, Merry-Lynn N. McHugh, Caitlin P. Morrison, Alanna C. Naseri, Take O’Connell, Jeffrey O’Donnell, Christopher J. Palmer, Nicholette D. Pankow, James S. Perry, James A. Peters, Ulrike Preuss, Michael H. Rao, D.C. Regan, Elizabeth A. Reupena, Sefuiva M. Roden, Dan M. Rodriguez-Santana, Jose Sitlani, Colleen M. Smith, Jennifer A. Tiwari, Hemant K. Vasan, Ramachandran S. Wang, Zeyuan Weeks, Daniel E. Wessel, Jennifer Wiggins, Kerri L. Wilkens, Lynne R. Wilson, Peter W.F. Yanek, Lisa R. Yoneda, Zachary T. Zhao, Wei Zöllner, Sebastian Arnett, Donna K. Ashley-Koch, Allison E. Barnes, Kathleen C. Blangero, John Boerwinkle, Eric Burchard, Esteban G. Carson, April P. Chasman, Daniel I. Chen, Yii-Der Ida Curran, Joanne E. Fornage, Myriam Gordeuk, Victor R. He, Jiang Heckbert, Susan R. Hou, Lifang Irvin, Marguerite R. Kooperberg, Charles Minster, Ryan L. Mitchell, Braxton D. Nouraie, Mehdi Psaty, Bruce M. Raffield, Laura M. Reiner, Alexander P. Rich, Stephen S. Rotter, Jerome I. Shoemaker, M. Benjamin Smith, Nicholas L. Taylor, Kent D. Telen, Marilyn J. Weiss, Scott T. Zhang, Yingze Heard-Costa, Nancy Sun, Yan V. Lin, Xihong Adrienne Cupples, L. Lange, Leslie A. Liu, Ching-Ti Loos, Ruth J.F. North, Kari E. Justice, Anne E. medRxiv Article Obesity is a major public health crisis associated with high mortality rates. Previous genome-wide association studies (GWAS) investigating body mass index (BMI) have largely relied on imputed data from European individuals. This study leveraged whole-genome sequencing (WGS) data from 88,873 participants from the Trans-Omics for Precision Medicine (TOPMed) Program, of which 51% were of non-European population groups. We discovered 18 BMI-associated signals (P < 5 × 10(−9)). Notably, we identified and replicated a novel low frequency single nucleotide polymorphism (SNP) in MTMR3 that was common in individuals of African descent. Using a diverse study population, we further identified two novel secondary signals in known BMI loci and pinpointed two likely causal variants in the POC5 and DMD loci. Our work demonstrates the benefits of combining WGS and diverse cohorts in expanding current catalog of variants and genes confer risk for obesity, bringing us one step closer to personalized medicine. Cold Spring Harbor Laboratory 2023-08-22 /pmc/articles/PMC10473809/ /pubmed/37662265 http://dx.doi.org/10.1101/2023.08.21.23293271 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Zhang, Xinruo Brody, Jennifer A. Graff, Mariaelisa Highland, Heather M. Chami, Nathalie Xu, Hanfei Wang, Zhe Ferrier, Kendra Chittoor, Geetha Josyula, Navya S. Li, Xihao Li, Zilin Allison, Matthew A. Becker, Diane M. Bielak, Lawrence F. Bis, Joshua C. Boorgula, Meher Preethi Bowden, Donald W. Broome, Jai G. Buth, Erin J. Carlson, Christopher S. Chang, Kyong-Mi Chavan, Sameer Chiu, Yen-Feng Chuang, Lee-Ming Conomos, Matthew P. DeMeo, Dawn L. Du, Margaret Duggirala, Ravindranath Eng, Celeste Fohner, Alison E. Freedman, Barry I. Garrett, Melanie E. Guo, Xiuqing Haiman, Chris Heavner, Benjamin D. Hidalgo, Bertha Hixson, James E. Ho, Yuk-Lam Hobbs, Brian D. Hu, Donglei Hui, Qin Hwu, Chii-Min Jackson, Rebecca D. Jain, Deepti Kalyani, Rita R. Kardia, Sharon L.R. Kelly, Tanika N. Lange, Ethan M. LeNoir, Michael Li, Changwei Marchand, Loic Le. McDonald, Merry-Lynn N. McHugh, Caitlin P. Morrison, Alanna C. Naseri, Take O’Connell, Jeffrey O’Donnell, Christopher J. Palmer, Nicholette D. Pankow, James S. Perry, James A. Peters, Ulrike Preuss, Michael H. Rao, D.C. Regan, Elizabeth A. Reupena, Sefuiva M. Roden, Dan M. Rodriguez-Santana, Jose Sitlani, Colleen M. Smith, Jennifer A. Tiwari, Hemant K. Vasan, Ramachandran S. Wang, Zeyuan Weeks, Daniel E. Wessel, Jennifer Wiggins, Kerri L. Wilkens, Lynne R. Wilson, Peter W.F. Yanek, Lisa R. Yoneda, Zachary T. Zhao, Wei Zöllner, Sebastian Arnett, Donna K. Ashley-Koch, Allison E. Barnes, Kathleen C. Blangero, John Boerwinkle, Eric Burchard, Esteban G. Carson, April P. Chasman, Daniel I. Chen, Yii-Der Ida Curran, Joanne E. Fornage, Myriam Gordeuk, Victor R. He, Jiang Heckbert, Susan R. Hou, Lifang Irvin, Marguerite R. Kooperberg, Charles Minster, Ryan L. Mitchell, Braxton D. Nouraie, Mehdi Psaty, Bruce M. Raffield, Laura M. Reiner, Alexander P. Rich, Stephen S. Rotter, Jerome I. Shoemaker, M. Benjamin Smith, Nicholas L. Taylor, Kent D. Telen, Marilyn J. Weiss, Scott T. Zhang, Yingze Heard-Costa, Nancy Sun, Yan V. Lin, Xihong Adrienne Cupples, L. Lange, Leslie A. Liu, Ching-Ti Loos, Ruth J.F. North, Kari E. Justice, Anne E. WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title | WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title_full | WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title_fullStr | WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title_full_unstemmed | WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title_short | WHOLE GENOME SEQUENCING ANALYSIS OF BODY MASS INDEX IDENTIFIES NOVEL AFRICAN ANCESTRY-SPECIFIC RISK ALLELE |
title_sort | whole genome sequencing analysis of body mass index identifies novel african ancestry-specific risk allele |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10473809/ https://www.ncbi.nlm.nih.gov/pubmed/37662265 http://dx.doi.org/10.1101/2023.08.21.23293271 |
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