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The genome sequence of the critically endangered Kroombit tinkerfrog ( Taudactylus pleione)
The Kroombit tinkerfrog ( Taudactylus pleione) is a stream-dwelling amphibian of the Myobatrachidae family. It is listed as Critically Endangered and is at high risk of extinction due to chytridiomycosis. Here, we provide the first genome assembly of the evolutionarily distinct Taudactylus genus. We...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10474343/ https://www.ncbi.nlm.nih.gov/pubmed/37663197 http://dx.doi.org/10.12688/f1000research.138571.2 |
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author | Farquharson, Katherine A. McLennan, Elspeth A. Belov, Katherine Hogg, Carolyn J. |
author_facet | Farquharson, Katherine A. McLennan, Elspeth A. Belov, Katherine Hogg, Carolyn J. |
author_sort | Farquharson, Katherine A. |
collection | PubMed |
description | The Kroombit tinkerfrog ( Taudactylus pleione) is a stream-dwelling amphibian of the Myobatrachidae family. It is listed as Critically Endangered and is at high risk of extinction due to chytridiomycosis. Here, we provide the first genome assembly of the evolutionarily distinct Taudactylus genus. We sequenced PacBio HiFi reads to assemble a high-quality long-read genome and identified the mitochondrial genome. We also generated a global transcriptome from a tadpole to improve gene annotation. The genome was 5.52 Gb in length and consisted of 4,196 contigs with a contig N50 of 8.853 Mb and an L50 of 153. This study provides the first genomic resources for the Kroombit tinkerfrog to assist in future phylogenetic, environmental DNA, conservation breeding, and disease susceptibility studies. |
format | Online Article Text |
id | pubmed-10474343 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-104743432023-11-16 The genome sequence of the critically endangered Kroombit tinkerfrog ( Taudactylus pleione) Farquharson, Katherine A. McLennan, Elspeth A. Belov, Katherine Hogg, Carolyn J. F1000Res Genome Note The Kroombit tinkerfrog ( Taudactylus pleione) is a stream-dwelling amphibian of the Myobatrachidae family. It is listed as Critically Endangered and is at high risk of extinction due to chytridiomycosis. Here, we provide the first genome assembly of the evolutionarily distinct Taudactylus genus. We sequenced PacBio HiFi reads to assemble a high-quality long-read genome and identified the mitochondrial genome. We also generated a global transcriptome from a tadpole to improve gene annotation. The genome was 5.52 Gb in length and consisted of 4,196 contigs with a contig N50 of 8.853 Mb and an L50 of 153. This study provides the first genomic resources for the Kroombit tinkerfrog to assist in future phylogenetic, environmental DNA, conservation breeding, and disease susceptibility studies. F1000 Research Limited 2023-11-16 /pmc/articles/PMC10474343/ /pubmed/37663197 http://dx.doi.org/10.12688/f1000research.138571.2 Text en Copyright: © 2023 Farquharson KA et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Note Farquharson, Katherine A. McLennan, Elspeth A. Belov, Katherine Hogg, Carolyn J. The genome sequence of the critically endangered Kroombit tinkerfrog ( Taudactylus pleione) |
title | The genome sequence of the critically endangered Kroombit tinkerfrog (
Taudactylus pleione) |
title_full | The genome sequence of the critically endangered Kroombit tinkerfrog (
Taudactylus pleione) |
title_fullStr | The genome sequence of the critically endangered Kroombit tinkerfrog (
Taudactylus pleione) |
title_full_unstemmed | The genome sequence of the critically endangered Kroombit tinkerfrog (
Taudactylus pleione) |
title_short | The genome sequence of the critically endangered Kroombit tinkerfrog (
Taudactylus pleione) |
title_sort | genome sequence of the critically endangered kroombit tinkerfrog (
taudactylus pleione) |
topic | Genome Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10474343/ https://www.ncbi.nlm.nih.gov/pubmed/37663197 http://dx.doi.org/10.12688/f1000research.138571.2 |
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