Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2

JBrowse 2 is a next-generation genome browser that can be run as a web or desktop application. We describe a new plugin, the Linkout Plugin, that enables users to link features to external databases based on their IDs and the remote URLs on JBrowse 2 desktop or web. As a result, genome analysis time...

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Detalles Bibliográficos
Autores principales: Chang, Chi-Hsien, Chen, Szu-Ping, Poelchau, Monica, Childers, Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Caltech Library 2023
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10474478/
https://www.ncbi.nlm.nih.gov/pubmed/37662054
http://dx.doi.org/10.17912/micropub.biology.000906
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author Chang, Chi-Hsien
Chen, Szu-Ping
Poelchau, Monica
Childers, Christopher
author_facet Chang, Chi-Hsien
Chen, Szu-Ping
Poelchau, Monica
Childers, Christopher
author_sort Chang, Chi-Hsien
collection PubMed
description JBrowse 2 is a next-generation genome browser that can be run as a web or desktop application. We describe a new plugin, the Linkout Plugin, that enables users to link features to external databases based on their IDs and the remote URLs on JBrowse 2 desktop or web. As a result, genome analysis time and effort are reduced, enabling researchers to gain insights more quickly. The Linkout Plugin fills a common need scientists have: looking for more information on a gene. Overall, the Linkout Plugin is a valuable and practical addition to the JBrowse functionality.
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spelling pubmed-104744782023-09-03 Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2 Chang, Chi-Hsien Chen, Szu-Ping Poelchau, Monica Childers, Christopher MicroPubl Biol Software JBrowse 2 is a next-generation genome browser that can be run as a web or desktop application. We describe a new plugin, the Linkout Plugin, that enables users to link features to external databases based on their IDs and the remote URLs on JBrowse 2 desktop or web. As a result, genome analysis time and effort are reduced, enabling researchers to gain insights more quickly. The Linkout Plugin fills a common need scientists have: looking for more information on a gene. Overall, the Linkout Plugin is a valuable and practical addition to the JBrowse functionality. Caltech Library 2023-08-19 /pmc/articles/PMC10474478/ /pubmed/37662054 http://dx.doi.org/10.17912/micropub.biology.000906 Text en Copyright: © 2023 by the authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Software
Chang, Chi-Hsien
Chen, Szu-Ping
Poelchau, Monica
Childers, Christopher
Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title_full Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title_fullStr Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title_full_unstemmed Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title_short Exploring Genetic Information with Ease: The Linkout Plugin for JBrowse 2
title_sort exploring genetic information with ease: the linkout plugin for jbrowse 2
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10474478/
https://www.ncbi.nlm.nih.gov/pubmed/37662054
http://dx.doi.org/10.17912/micropub.biology.000906
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