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Parasitic egg recognition using convolution and attention network

Intestinal parasitic infections (IPIs) caused by protozoan and helminth parasites are among the most common infections in humans in low-and-middle-income countries. IPIs affect not only the health status of a country, but also the economic sector. Over the last decade, pattern recognition and image...

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Autores principales: AlDahoul, Nouar, Karim, Hezerul Abdul, Momo, Mhd Adel, Escobar, Francesca Isabelle F., Magallanes, Vina Alyzza, Tan, Myles Joshua Toledo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10475085/
https://www.ncbi.nlm.nih.gov/pubmed/37660120
http://dx.doi.org/10.1038/s41598-023-41711-3
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author AlDahoul, Nouar
Karim, Hezerul Abdul
Momo, Mhd Adel
Escobar, Francesca Isabelle F.
Magallanes, Vina Alyzza
Tan, Myles Joshua Toledo
author_facet AlDahoul, Nouar
Karim, Hezerul Abdul
Momo, Mhd Adel
Escobar, Francesca Isabelle F.
Magallanes, Vina Alyzza
Tan, Myles Joshua Toledo
author_sort AlDahoul, Nouar
collection PubMed
description Intestinal parasitic infections (IPIs) caused by protozoan and helminth parasites are among the most common infections in humans in low-and-middle-income countries. IPIs affect not only the health status of a country, but also the economic sector. Over the last decade, pattern recognition and image processing techniques have been developed to automatically identify parasitic eggs in microscopic images. Existing identification techniques are still suffering from diagnosis errors and low sensitivity. Therefore, more accurate and faster solution is still required to recognize parasitic eggs and classify them into several categories. A novel Chula-ParasiteEgg dataset including 11,000 microscopic images proposed in ICIP2022 was utilized to train various methods such as convolutional neural network (CNN) based models and convolution and attention (CoAtNet) based models. The experiments conducted show high recognition performance of the proposed CoAtNet that was tuned with microscopic images of parasitic eggs. The CoAtNet produced an average accuracy of 93%, and an average F1 score of 93%. The finding opens door to integrate the proposed solution in automated parasitological diagnosis.
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spelling pubmed-104750852023-09-04 Parasitic egg recognition using convolution and attention network AlDahoul, Nouar Karim, Hezerul Abdul Momo, Mhd Adel Escobar, Francesca Isabelle F. Magallanes, Vina Alyzza Tan, Myles Joshua Toledo Sci Rep Article Intestinal parasitic infections (IPIs) caused by protozoan and helminth parasites are among the most common infections in humans in low-and-middle-income countries. IPIs affect not only the health status of a country, but also the economic sector. Over the last decade, pattern recognition and image processing techniques have been developed to automatically identify parasitic eggs in microscopic images. Existing identification techniques are still suffering from diagnosis errors and low sensitivity. Therefore, more accurate and faster solution is still required to recognize parasitic eggs and classify them into several categories. A novel Chula-ParasiteEgg dataset including 11,000 microscopic images proposed in ICIP2022 was utilized to train various methods such as convolutional neural network (CNN) based models and convolution and attention (CoAtNet) based models. The experiments conducted show high recognition performance of the proposed CoAtNet that was tuned with microscopic images of parasitic eggs. The CoAtNet produced an average accuracy of 93%, and an average F1 score of 93%. The finding opens door to integrate the proposed solution in automated parasitological diagnosis. Nature Publishing Group UK 2023-09-02 /pmc/articles/PMC10475085/ /pubmed/37660120 http://dx.doi.org/10.1038/s41598-023-41711-3 Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
AlDahoul, Nouar
Karim, Hezerul Abdul
Momo, Mhd Adel
Escobar, Francesca Isabelle F.
Magallanes, Vina Alyzza
Tan, Myles Joshua Toledo
Parasitic egg recognition using convolution and attention network
title Parasitic egg recognition using convolution and attention network
title_full Parasitic egg recognition using convolution and attention network
title_fullStr Parasitic egg recognition using convolution and attention network
title_full_unstemmed Parasitic egg recognition using convolution and attention network
title_short Parasitic egg recognition using convolution and attention network
title_sort parasitic egg recognition using convolution and attention network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10475085/
https://www.ncbi.nlm.nih.gov/pubmed/37660120
http://dx.doi.org/10.1038/s41598-023-41711-3
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