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Lysosome-related genes: A new prognostic marker for lung adenocarcinoma

Currently, a reliable early prognostic marker has not been identified for lung adenocarcinoma (LUAD), the most common malignancy. Recent studies demonstrated that lysosomal rupture is involved in cancer migration, progression, and immune microenvironment formation. We performed a bioinformatics anal...

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Autores principales: Hu, Zeyang, Chen, Hang, Li, Hongxiang, Xu, Shuguang, Mu, Yinyu, Pan, Qiaoling, Tong, Jingtao, Xu, Guodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10476855/
https://www.ncbi.nlm.nih.gov/pubmed/37657029
http://dx.doi.org/10.1097/MD.0000000000034844
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author Hu, Zeyang
Chen, Hang
Li, Hongxiang
Xu, Shuguang
Mu, Yinyu
Pan, Qiaoling
Tong, Jingtao
Xu, Guodong
author_facet Hu, Zeyang
Chen, Hang
Li, Hongxiang
Xu, Shuguang
Mu, Yinyu
Pan, Qiaoling
Tong, Jingtao
Xu, Guodong
author_sort Hu, Zeyang
collection PubMed
description Currently, a reliable early prognostic marker has not been identified for lung adenocarcinoma (LUAD), the most common malignancy. Recent studies demonstrated that lysosomal rupture is involved in cancer migration, progression, and immune microenvironment formation. We performed a bioinformatics analysis of lysosomal rupture to investigate whether lysosome-related genes (LRGs) are key in LUAD. The analysis identified 23 LRGs. Cytoscape visualization identified 10 core genes (CCNA2, DLGAP5, BUB1B, KIF2C, PBK, CDC20, NCAPG, ASPM, KIF4A, ANLN). With the 23 LRGs, we established a new risk scoring rule to classify patients with LUAD into high- and low-risk groups and verified the accuracy of the risk score by receiver operating characteristic curves and established a nomogram to evaluate clinical patients. Immunotherapy effectiveness between the high- and low-risk groups was evaluated based on the tumor mutational burden and analyses of immune cell infiltration and drug sensitivity. Pathway enrichment analysis revealed that lysosomes were closely associated with glucose metabolism, amino acid metabolism, and the immune response in patients with LUAD. Lysosomes are a likely new therapeutic target and provide new directions and ideas for treating and managing patients with LUAD.
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spelling pubmed-104768552023-09-05 Lysosome-related genes: A new prognostic marker for lung adenocarcinoma Hu, Zeyang Chen, Hang Li, Hongxiang Xu, Shuguang Mu, Yinyu Pan, Qiaoling Tong, Jingtao Xu, Guodong Medicine (Baltimore) 5700 Currently, a reliable early prognostic marker has not been identified for lung adenocarcinoma (LUAD), the most common malignancy. Recent studies demonstrated that lysosomal rupture is involved in cancer migration, progression, and immune microenvironment formation. We performed a bioinformatics analysis of lysosomal rupture to investigate whether lysosome-related genes (LRGs) are key in LUAD. The analysis identified 23 LRGs. Cytoscape visualization identified 10 core genes (CCNA2, DLGAP5, BUB1B, KIF2C, PBK, CDC20, NCAPG, ASPM, KIF4A, ANLN). With the 23 LRGs, we established a new risk scoring rule to classify patients with LUAD into high- and low-risk groups and verified the accuracy of the risk score by receiver operating characteristic curves and established a nomogram to evaluate clinical patients. Immunotherapy effectiveness between the high- and low-risk groups was evaluated based on the tumor mutational burden and analyses of immune cell infiltration and drug sensitivity. Pathway enrichment analysis revealed that lysosomes were closely associated with glucose metabolism, amino acid metabolism, and the immune response in patients with LUAD. Lysosomes are a likely new therapeutic target and provide new directions and ideas for treating and managing patients with LUAD. Lippincott Williams & Wilkins 2023-09-01 /pmc/articles/PMC10476855/ /pubmed/37657029 http://dx.doi.org/10.1097/MD.0000000000034844 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Hu, Zeyang
Chen, Hang
Li, Hongxiang
Xu, Shuguang
Mu, Yinyu
Pan, Qiaoling
Tong, Jingtao
Xu, Guodong
Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title_full Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title_fullStr Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title_full_unstemmed Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title_short Lysosome-related genes: A new prognostic marker for lung adenocarcinoma
title_sort lysosome-related genes: a new prognostic marker for lung adenocarcinoma
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10476855/
https://www.ncbi.nlm.nih.gov/pubmed/37657029
http://dx.doi.org/10.1097/MD.0000000000034844
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