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Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy

Deep learning (DL) models for radiation therapy (RT) image segmentation require accurately annotated training data. Multiple organ delineation guidelines exist; however, information on the used guideline is not provided with the delineation. Extraction of training data with coherent guidelines can t...

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Autores principales: Lempart, Michael, Scherman, Jonas, Nilsson, Martin P., Jamtheim Gustafsson, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10476996/
https://www.ncbi.nlm.nih.gov/pubmed/37177830
http://dx.doi.org/10.1002/acm2.14022
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author Lempart, Michael
Scherman, Jonas
Nilsson, Martin P.
Jamtheim Gustafsson, Christian
author_facet Lempart, Michael
Scherman, Jonas
Nilsson, Martin P.
Jamtheim Gustafsson, Christian
author_sort Lempart, Michael
collection PubMed
description Deep learning (DL) models for radiation therapy (RT) image segmentation require accurately annotated training data. Multiple organ delineation guidelines exist; however, information on the used guideline is not provided with the delineation. Extraction of training data with coherent guidelines can therefore be challenging. We present a supervised classification method for pelvis structure delineations where bowel cavity, femoral heads, bladder, and rectum data, with two guidelines, were classified. The impact on DL‐based segmentation quality using mixed guideline training data was also demonstrated. Bowel cavity was manually delineated on CT images for anal cancer patients (n = 170) according to guidelines Devisetty and RTOG. The DL segmentation quality from using training data with coherent or mixed guidelines was investigated. A supervised 3D squeeze‐and‐excite SENet‐154 model was trained to classify two bowel cavity delineation guidelines. In addition, a pelvis CT dataset with manual delineations from prostate cancer patients (n = 1854) was used where data with an alternative guideline for femoral heads, rectum, and bladder were generated using commercial software. The model was evaluated on internal (n = 200) and external test data (n = 99). By using mixed, compared to coherent, delineation guideline training data mean DICE score decreased 3% units, mean Hausdorff distance (95%) increased 5 mm and mean surface distance (MSD) increased 1 mm. The classification of bowel cavity test data achieved 99.8% unweighted classification accuracy, 99.9% macro average precision, 97.2% macro average recall, and 98.5% macro average F1. Corresponding metrics for the pelvis internal test data were all 99% or above and for the external pelvis test data they were 96.3%, 96.6%, 93.3%, and 94.6%. Impaired segmentation performance was observed for training data with mixed guidelines. The DL delineation classification models achieved excellent results on internal and external test data. This can facilitate automated guideline‐specific data extraction while avoiding the need for consistent and correct structure labels.
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spelling pubmed-104769962023-09-05 Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy Lempart, Michael Scherman, Jonas Nilsson, Martin P. Jamtheim Gustafsson, Christian J Appl Clin Med Phys Radiation Oncology Physics Deep learning (DL) models for radiation therapy (RT) image segmentation require accurately annotated training data. Multiple organ delineation guidelines exist; however, information on the used guideline is not provided with the delineation. Extraction of training data with coherent guidelines can therefore be challenging. We present a supervised classification method for pelvis structure delineations where bowel cavity, femoral heads, bladder, and rectum data, with two guidelines, were classified. The impact on DL‐based segmentation quality using mixed guideline training data was also demonstrated. Bowel cavity was manually delineated on CT images for anal cancer patients (n = 170) according to guidelines Devisetty and RTOG. The DL segmentation quality from using training data with coherent or mixed guidelines was investigated. A supervised 3D squeeze‐and‐excite SENet‐154 model was trained to classify two bowel cavity delineation guidelines. In addition, a pelvis CT dataset with manual delineations from prostate cancer patients (n = 1854) was used where data with an alternative guideline for femoral heads, rectum, and bladder were generated using commercial software. The model was evaluated on internal (n = 200) and external test data (n = 99). By using mixed, compared to coherent, delineation guideline training data mean DICE score decreased 3% units, mean Hausdorff distance (95%) increased 5 mm and mean surface distance (MSD) increased 1 mm. The classification of bowel cavity test data achieved 99.8% unweighted classification accuracy, 99.9% macro average precision, 97.2% macro average recall, and 98.5% macro average F1. Corresponding metrics for the pelvis internal test data were all 99% or above and for the external pelvis test data they were 96.3%, 96.6%, 93.3%, and 94.6%. Impaired segmentation performance was observed for training data with mixed guidelines. The DL delineation classification models achieved excellent results on internal and external test data. This can facilitate automated guideline‐specific data extraction while avoiding the need for consistent and correct structure labels. John Wiley and Sons Inc. 2023-05-12 /pmc/articles/PMC10476996/ /pubmed/37177830 http://dx.doi.org/10.1002/acm2.14022 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Radiation Oncology Physics
Lempart, Michael
Scherman, Jonas
Nilsson, Martin P.
Jamtheim Gustafsson, Christian
Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title_full Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title_fullStr Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title_full_unstemmed Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title_short Deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
title_sort deep learning‐based classification of organs at risk and delineation guideline in pelvic cancer radiation therapy
topic Radiation Oncology Physics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10476996/
https://www.ncbi.nlm.nih.gov/pubmed/37177830
http://dx.doi.org/10.1002/acm2.14022
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