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2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning
Recent research in computational imaging largely focuses on developing machine learning (ML) techniques for image reconstruction, which requires large-scale training datasets consisting of measurement data and ground-truth images. However, suitable experimental datasets for X-ray Computed Tomography...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477177/ https://www.ncbi.nlm.nih.gov/pubmed/37666897 http://dx.doi.org/10.1038/s41597-023-02484-6 |
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author | Kiss, Maximilian B. Coban, Sophia B. Batenburg, K. Joost van Leeuwen, Tristan Lucka, Felix |
author_facet | Kiss, Maximilian B. Coban, Sophia B. Batenburg, K. Joost van Leeuwen, Tristan Lucka, Felix |
author_sort | Kiss, Maximilian B. |
collection | PubMed |
description | Recent research in computational imaging largely focuses on developing machine learning (ML) techniques for image reconstruction, which requires large-scale training datasets consisting of measurement data and ground-truth images. However, suitable experimental datasets for X-ray Computed Tomography (CT) are scarce, and methods are often developed and evaluated only on simulated data. We fill this gap by providing the community with a versatile, open 2D fan-beam CT dataset suitable for developing ML techniques for a range of image reconstruction tasks. To acquire it, we designed a sophisticated, semi-automatic scan procedure that utilizes a highly-flexible laboratory X-ray CT setup. A diverse mix of samples with high natural variability in shape and density was scanned slice-by-slice (5,000 slices in total) with high angular and spatial resolution and three different beam characteristics: A high-fidelity, a low-dose and a beam-hardening-inflicted mode. In addition, 750 out-of-distribution slices were scanned with sample and beam variations to accommodate robustness and segmentation tasks. We provide raw projection data, reference reconstructions and segmentations based on an open-source data processing pipeline. |
format | Online Article Text |
id | pubmed-10477177 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104771772023-09-06 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning Kiss, Maximilian B. Coban, Sophia B. Batenburg, K. Joost van Leeuwen, Tristan Lucka, Felix Sci Data Data Descriptor Recent research in computational imaging largely focuses on developing machine learning (ML) techniques for image reconstruction, which requires large-scale training datasets consisting of measurement data and ground-truth images. However, suitable experimental datasets for X-ray Computed Tomography (CT) are scarce, and methods are often developed and evaluated only on simulated data. We fill this gap by providing the community with a versatile, open 2D fan-beam CT dataset suitable for developing ML techniques for a range of image reconstruction tasks. To acquire it, we designed a sophisticated, semi-automatic scan procedure that utilizes a highly-flexible laboratory X-ray CT setup. A diverse mix of samples with high natural variability in shape and density was scanned slice-by-slice (5,000 slices in total) with high angular and spatial resolution and three different beam characteristics: A high-fidelity, a low-dose and a beam-hardening-inflicted mode. In addition, 750 out-of-distribution slices were scanned with sample and beam variations to accommodate robustness and segmentation tasks. We provide raw projection data, reference reconstructions and segmentations based on an open-source data processing pipeline. Nature Publishing Group UK 2023-09-04 /pmc/articles/PMC10477177/ /pubmed/37666897 http://dx.doi.org/10.1038/s41597-023-02484-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Kiss, Maximilian B. Coban, Sophia B. Batenburg, K. Joost van Leeuwen, Tristan Lucka, Felix 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title | 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title_full | 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title_fullStr | 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title_full_unstemmed | 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title_short | 2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning |
title_sort | 2detect - a large 2d expandable, trainable, experimental computed tomography dataset for machine learning |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477177/ https://www.ncbi.nlm.nih.gov/pubmed/37666897 http://dx.doi.org/10.1038/s41597-023-02484-6 |
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