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Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma

Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not...

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Autores principales: Guan, Hewen, Chen, Xu, Liu, Jifeng, Sun, Jiaao, Guo, Hui, Jiang, Yuankuan, Zhang, Huimin, Zhang, Biao, Lin, Jingrong, Yuan, Qihang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477197/
https://www.ncbi.nlm.nih.gov/pubmed/37666853
http://dx.doi.org/10.1038/s41598-023-38850-y
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author Guan, Hewen
Chen, Xu
Liu, Jifeng
Sun, Jiaao
Guo, Hui
Jiang, Yuankuan
Zhang, Huimin
Zhang, Biao
Lin, Jingrong
Yuan, Qihang
author_facet Guan, Hewen
Chen, Xu
Liu, Jifeng
Sun, Jiaao
Guo, Hui
Jiang, Yuankuan
Zhang, Huimin
Zhang, Biao
Lin, Jingrong
Yuan, Qihang
author_sort Guan, Hewen
collection PubMed
description Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not been fully elucidated. Based on multi-omics data from TCGA and GEO databases, we first performed pan-cancer analysis on TLR, including CNV, SNV, and mRNA changes in TLR-related genes in multiple human cancers, as well as patient prognosis characterization. Then, we divided melanoma patients into three subgroups (clusters 1, 2, and 3) according to the expression of the TLR pathway, and explored the correlation between TLR pathway and melanoma prognosis, immune infiltration, metabolic reprogramming, and oncogene expression characteristics. Finally, through univariate Cox regression analysis and LASSO algorithm, we selected six TLR-related genes to construct a survival prognostic model, divided melanoma patients into the training set, internal validation set 1, internal validation set 2, and external validation set for multiple validations, and discussed the correlation between model genes and clinical features of melanoma patients. In conclusion, we constructed a prognostic survival model based on TLR-related genes that precisely and independently demonstrated the potential to assess the prognosis and immune traits of melanoma patients, which is critical for patients’ survival.
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spelling pubmed-104771972023-09-06 Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma Guan, Hewen Chen, Xu Liu, Jifeng Sun, Jiaao Guo, Hui Jiang, Yuankuan Zhang, Huimin Zhang, Biao Lin, Jingrong Yuan, Qihang Sci Rep Article Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not been fully elucidated. Based on multi-omics data from TCGA and GEO databases, we first performed pan-cancer analysis on TLR, including CNV, SNV, and mRNA changes in TLR-related genes in multiple human cancers, as well as patient prognosis characterization. Then, we divided melanoma patients into three subgroups (clusters 1, 2, and 3) according to the expression of the TLR pathway, and explored the correlation between TLR pathway and melanoma prognosis, immune infiltration, metabolic reprogramming, and oncogene expression characteristics. Finally, through univariate Cox regression analysis and LASSO algorithm, we selected six TLR-related genes to construct a survival prognostic model, divided melanoma patients into the training set, internal validation set 1, internal validation set 2, and external validation set for multiple validations, and discussed the correlation between model genes and clinical features of melanoma patients. In conclusion, we constructed a prognostic survival model based on TLR-related genes that precisely and independently demonstrated the potential to assess the prognosis and immune traits of melanoma patients, which is critical for patients’ survival. Nature Publishing Group UK 2023-09-04 /pmc/articles/PMC10477197/ /pubmed/37666853 http://dx.doi.org/10.1038/s41598-023-38850-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Guan, Hewen
Chen, Xu
Liu, Jifeng
Sun, Jiaao
Guo, Hui
Jiang, Yuankuan
Zhang, Huimin
Zhang, Biao
Lin, Jingrong
Yuan, Qihang
Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title_full Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title_fullStr Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title_full_unstemmed Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title_short Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
title_sort molecular characteristics and therapeutic implications of toll-like receptor signaling pathway in melanoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477197/
https://www.ncbi.nlm.nih.gov/pubmed/37666853
http://dx.doi.org/10.1038/s41598-023-38850-y
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