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Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma
Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477197/ https://www.ncbi.nlm.nih.gov/pubmed/37666853 http://dx.doi.org/10.1038/s41598-023-38850-y |
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author | Guan, Hewen Chen, Xu Liu, Jifeng Sun, Jiaao Guo, Hui Jiang, Yuankuan Zhang, Huimin Zhang, Biao Lin, Jingrong Yuan, Qihang |
author_facet | Guan, Hewen Chen, Xu Liu, Jifeng Sun, Jiaao Guo, Hui Jiang, Yuankuan Zhang, Huimin Zhang, Biao Lin, Jingrong Yuan, Qihang |
author_sort | Guan, Hewen |
collection | PubMed |
description | Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not been fully elucidated. Based on multi-omics data from TCGA and GEO databases, we first performed pan-cancer analysis on TLR, including CNV, SNV, and mRNA changes in TLR-related genes in multiple human cancers, as well as patient prognosis characterization. Then, we divided melanoma patients into three subgroups (clusters 1, 2, and 3) according to the expression of the TLR pathway, and explored the correlation between TLR pathway and melanoma prognosis, immune infiltration, metabolic reprogramming, and oncogene expression characteristics. Finally, through univariate Cox regression analysis and LASSO algorithm, we selected six TLR-related genes to construct a survival prognostic model, divided melanoma patients into the training set, internal validation set 1, internal validation set 2, and external validation set for multiple validations, and discussed the correlation between model genes and clinical features of melanoma patients. In conclusion, we constructed a prognostic survival model based on TLR-related genes that precisely and independently demonstrated the potential to assess the prognosis and immune traits of melanoma patients, which is critical for patients’ survival. |
format | Online Article Text |
id | pubmed-10477197 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104771972023-09-06 Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma Guan, Hewen Chen, Xu Liu, Jifeng Sun, Jiaao Guo, Hui Jiang, Yuankuan Zhang, Huimin Zhang, Biao Lin, Jingrong Yuan, Qihang Sci Rep Article Melanoma is a malignant tumor of melanocytes and is often considered immunogenic cancer. Toll-like receptor-related genes are expressed differently in most types of cancer, depending on the immune microenvironment inside cancer, and the key function of Toll-like receptors (TLRs) for melanoma has not been fully elucidated. Based on multi-omics data from TCGA and GEO databases, we first performed pan-cancer analysis on TLR, including CNV, SNV, and mRNA changes in TLR-related genes in multiple human cancers, as well as patient prognosis characterization. Then, we divided melanoma patients into three subgroups (clusters 1, 2, and 3) according to the expression of the TLR pathway, and explored the correlation between TLR pathway and melanoma prognosis, immune infiltration, metabolic reprogramming, and oncogene expression characteristics. Finally, through univariate Cox regression analysis and LASSO algorithm, we selected six TLR-related genes to construct a survival prognostic model, divided melanoma patients into the training set, internal validation set 1, internal validation set 2, and external validation set for multiple validations, and discussed the correlation between model genes and clinical features of melanoma patients. In conclusion, we constructed a prognostic survival model based on TLR-related genes that precisely and independently demonstrated the potential to assess the prognosis and immune traits of melanoma patients, which is critical for patients’ survival. Nature Publishing Group UK 2023-09-04 /pmc/articles/PMC10477197/ /pubmed/37666853 http://dx.doi.org/10.1038/s41598-023-38850-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Guan, Hewen Chen, Xu Liu, Jifeng Sun, Jiaao Guo, Hui Jiang, Yuankuan Zhang, Huimin Zhang, Biao Lin, Jingrong Yuan, Qihang Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title | Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title_full | Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title_fullStr | Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title_full_unstemmed | Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title_short | Molecular characteristics and therapeutic implications of Toll-like receptor signaling pathway in melanoma |
title_sort | molecular characteristics and therapeutic implications of toll-like receptor signaling pathway in melanoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10477197/ https://www.ncbi.nlm.nih.gov/pubmed/37666853 http://dx.doi.org/10.1038/s41598-023-38850-y |
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