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Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging

BACKGROUND: To present an approach that autonomously identifies and selects a self-selective optimal target for the purpose of enhancing learning efficiency to segment infected regions of the lung from chest computed tomography images. We designed a semi-supervised dual-branch framework for training...

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Autores principales: Du, Peng, Niu, Xiaofeng, Li, Xukun, Ying, Chiqing, Zhou, Yukun, He, Chang, Lv, Shuangzhi, Liu, Xiaoli, Du, Weibo, Wu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478337/
https://www.ncbi.nlm.nih.gov/pubmed/37667214
http://dx.doi.org/10.1186/s12859-023-05435-5
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author Du, Peng
Niu, Xiaofeng
Li, Xukun
Ying, Chiqing
Zhou, Yukun
He, Chang
Lv, Shuangzhi
Liu, Xiaoli
Du, Weibo
Wu, Wei
author_facet Du, Peng
Niu, Xiaofeng
Li, Xukun
Ying, Chiqing
Zhou, Yukun
He, Chang
Lv, Shuangzhi
Liu, Xiaoli
Du, Weibo
Wu, Wei
author_sort Du, Peng
collection PubMed
description BACKGROUND: To present an approach that autonomously identifies and selects a self-selective optimal target for the purpose of enhancing learning efficiency to segment infected regions of the lung from chest computed tomography images. We designed a semi-supervised dual-branch framework for training, where the training set consisted of limited expert-annotated data and a large amount of coarsely annotated data that was automatically segmented based on Hu values, which were used to train both strong and weak branches. In addition, we employed the Lovasz scoring method to automatically switch the supervision target in the weak branch and select the optimal target as the supervision object for training. This method can use noisy labels for rapid localization during the early stages of training, and gradually use more accurate targets for supervised training as the training progresses. This approach can utilize a large number of samples that do not require manual annotation, and with the iterations of training, the supervised targets containing noise become closer and closer to the fine-annotated data, which significantly improves the accuracy of the final model. RESULTS: The proposed dual-branch deep learning network based on semi-supervision together with cost-effective samples achieved 83.56 ± 12.10 and 82.67 ± 8.04 on our internal and external test benchmarks measured by the mean Dice similarity coefficient (DSC). Through experimental comparison, the DSC value of the proposed algorithm was improved by 13.54% and 2.02% on the internal benchmark and 13.37% and 2.13% on the external benchmark compared with U-Net without extra sample assistance and the mean-teacher frontier algorithm, respectively. CONCLUSION: The cost-effective pseudolabeled samples assisted the training of DL models and achieved much better results compared with traditional DL models with manually labeled samples only. Furthermore, our method also achieved the best performance compared with other up-to-date dual branch structures.
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spelling pubmed-104783372023-09-06 Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging Du, Peng Niu, Xiaofeng Li, Xukun Ying, Chiqing Zhou, Yukun He, Chang Lv, Shuangzhi Liu, Xiaoli Du, Weibo Wu, Wei BMC Bioinformatics Research BACKGROUND: To present an approach that autonomously identifies and selects a self-selective optimal target for the purpose of enhancing learning efficiency to segment infected regions of the lung from chest computed tomography images. We designed a semi-supervised dual-branch framework for training, where the training set consisted of limited expert-annotated data and a large amount of coarsely annotated data that was automatically segmented based on Hu values, which were used to train both strong and weak branches. In addition, we employed the Lovasz scoring method to automatically switch the supervision target in the weak branch and select the optimal target as the supervision object for training. This method can use noisy labels for rapid localization during the early stages of training, and gradually use more accurate targets for supervised training as the training progresses. This approach can utilize a large number of samples that do not require manual annotation, and with the iterations of training, the supervised targets containing noise become closer and closer to the fine-annotated data, which significantly improves the accuracy of the final model. RESULTS: The proposed dual-branch deep learning network based on semi-supervision together with cost-effective samples achieved 83.56 ± 12.10 and 82.67 ± 8.04 on our internal and external test benchmarks measured by the mean Dice similarity coefficient (DSC). Through experimental comparison, the DSC value of the proposed algorithm was improved by 13.54% and 2.02% on the internal benchmark and 13.37% and 2.13% on the external benchmark compared with U-Net without extra sample assistance and the mean-teacher frontier algorithm, respectively. CONCLUSION: The cost-effective pseudolabeled samples assisted the training of DL models and achieved much better results compared with traditional DL models with manually labeled samples only. Furthermore, our method also achieved the best performance compared with other up-to-date dual branch structures. BioMed Central 2023-09-04 /pmc/articles/PMC10478337/ /pubmed/37667214 http://dx.doi.org/10.1186/s12859-023-05435-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Du, Peng
Niu, Xiaofeng
Li, Xukun
Ying, Chiqing
Zhou, Yukun
He, Chang
Lv, Shuangzhi
Liu, Xiaoli
Du, Weibo
Wu, Wei
Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title_full Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title_fullStr Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title_full_unstemmed Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title_short Automatically transferring supervised targets method for segmenting lung lesion regions with CT imaging
title_sort automatically transferring supervised targets method for segmenting lung lesion regions with ct imaging
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478337/
https://www.ncbi.nlm.nih.gov/pubmed/37667214
http://dx.doi.org/10.1186/s12859-023-05435-5
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