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Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios
Hirshfeld surface analysis is a widely used tool for identifying the types of intermolecular contacts that contribute most significantly to crystal packing stabilization. One useful metric for analyzing these contacts is the contact enrichment descriptor, which indicates the types of contacts that a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478513/ https://www.ncbi.nlm.nih.gov/pubmed/37449972 http://dx.doi.org/10.1107/S2052252523005675 |
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author | Jelsch, Christian Bibila Mayaya Bisseyou, Yvon |
author_facet | Jelsch, Christian Bibila Mayaya Bisseyou, Yvon |
author_sort | Jelsch, Christian |
collection | PubMed |
description | Hirshfeld surface analysis is a widely used tool for identifying the types of intermolecular contacts that contribute most significantly to crystal packing stabilization. One useful metric for analyzing these contacts is the contact enrichment descriptor, which indicates the types of contacts that are over- or under-represented. In this statistical study, enrichment ratios were combined with electrostatic energy (E (elec)) data for a variety of compound families. To compute the electrostatic interaction energy between atoms, charge density models from the ELMAM2 database of multipolar atoms were used. As expected, strong hydrogen bonds such as O/N—H⋯N and O/N—H⋯O typically display large enrichment values and have the most negative (i.e. favorable) electrostatic energies. Conversely, contacts that are repulsive from an electrostatic perspective are usually the most under-represented. Analyzing the enrichment ratio and electrostatic energy indicators was shown to help identify which favorable contacts are the most competitive with each other. For weaker interactions, such as hydrophobic contacts, the behavior is less clear cut and can depend on other factors such as the chemical content of the molecule. The anticorrelation between contact enrichment and E (elec) is generally lost for weaker contacts. However, we observed that C⋯C contacts are often enriched in crystal structures containing heterocycles, despite the low electrostatic attraction. For molecules with only weak hydrogen bond donors/acceptors and hydrophobic groups, the correlation between contact enrichment and E (elec) is still evident for the strongest of these interactions. However, there are some exceptions where the most favorable contacts from an electrostatic perspective are not the most over-represented. This can occur in cases where the shape of the molecule is complex or elongated, favoring dispersion forces and shape complementarity in the packing. |
format | Online Article Text |
id | pubmed-10478513 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-104785132023-09-06 Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios Jelsch, Christian Bibila Mayaya Bisseyou, Yvon IUCrJ Research Papers Hirshfeld surface analysis is a widely used tool for identifying the types of intermolecular contacts that contribute most significantly to crystal packing stabilization. One useful metric for analyzing these contacts is the contact enrichment descriptor, which indicates the types of contacts that are over- or under-represented. In this statistical study, enrichment ratios were combined with electrostatic energy (E (elec)) data for a variety of compound families. To compute the electrostatic interaction energy between atoms, charge density models from the ELMAM2 database of multipolar atoms were used. As expected, strong hydrogen bonds such as O/N—H⋯N and O/N—H⋯O typically display large enrichment values and have the most negative (i.e. favorable) electrostatic energies. Conversely, contacts that are repulsive from an electrostatic perspective are usually the most under-represented. Analyzing the enrichment ratio and electrostatic energy indicators was shown to help identify which favorable contacts are the most competitive with each other. For weaker interactions, such as hydrophobic contacts, the behavior is less clear cut and can depend on other factors such as the chemical content of the molecule. The anticorrelation between contact enrichment and E (elec) is generally lost for weaker contacts. However, we observed that C⋯C contacts are often enriched in crystal structures containing heterocycles, despite the low electrostatic attraction. For molecules with only weak hydrogen bond donors/acceptors and hydrophobic groups, the correlation between contact enrichment and E (elec) is still evident for the strongest of these interactions. However, there are some exceptions where the most favorable contacts from an electrostatic perspective are not the most over-represented. This can occur in cases where the shape of the molecule is complex or elongated, favoring dispersion forces and shape complementarity in the packing. International Union of Crystallography 2023-07-15 /pmc/articles/PMC10478513/ /pubmed/37449972 http://dx.doi.org/10.1107/S2052252523005675 Text en © Christian Jelsch et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Jelsch, Christian Bibila Mayaya Bisseyou, Yvon Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title | Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title_full | Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title_fullStr | Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title_full_unstemmed | Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title_short | Deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
title_sort | deciphering the driving forces in crystal packing by analysis of electrostatic energies and contact enrichment ratios |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478513/ https://www.ncbi.nlm.nih.gov/pubmed/37449972 http://dx.doi.org/10.1107/S2052252523005675 |
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