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The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia

Elephantopus scaber L. is a useful medicinal plant and has been used as a traditional medicine for various diseases in Asia. In this study, we completed and characterized the chloroplast genome of E. scaber of which the length was 152,375 bp. This circular genome had a large-single copy (LSC, 83,520...

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Autores principales: Nguyen, Pham Anh Thi, Khang, Do Tan, Nguyen, Pham Thien Trang, Do, Hoang Dang Khoa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478624/
https://www.ncbi.nlm.nih.gov/pubmed/37674912
http://dx.doi.org/10.1080/23802359.2023.2252944
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author Nguyen, Pham Anh Thi
Khang, Do Tan
Nguyen, Pham Thien Trang
Do, Hoang Dang Khoa
author_facet Nguyen, Pham Anh Thi
Khang, Do Tan
Nguyen, Pham Thien Trang
Do, Hoang Dang Khoa
author_sort Nguyen, Pham Anh Thi
collection PubMed
description Elephantopus scaber L. is a useful medicinal plant and has been used as a traditional medicine for various diseases in Asia. In this study, we completed and characterized the chloroplast genome of E. scaber of which the length was 152,375 bp. This circular genome had a large-single copy (LSC, 83,520 bp), a small-single copy (SSC, 18,523 bp), and two inverted repeat regions (IR, 25,166 bp). There were 80 protein-coding genes, 30 tRNA genes, and four rRNA genes in the chloroplast genome of E. scaber. Phylogenetic analysis inferred from 80 protein-coding regions revealed a close relationship between E. scaber and Cyanthillium cinereum (L.) H.Rob. and a sister relationship between Vernonioideae and Cichorioideae subfamilies. The genomic data of E. scaber provide useful information to explore the molecular evolution of not only Elephantopus genus but also the Asteraceae family.
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spelling pubmed-104786242023-09-06 The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia Nguyen, Pham Anh Thi Khang, Do Tan Nguyen, Pham Thien Trang Do, Hoang Dang Khoa Mitochondrial DNA B Resour Plastome Announcement Elephantopus scaber L. is a useful medicinal plant and has been used as a traditional medicine for various diseases in Asia. In this study, we completed and characterized the chloroplast genome of E. scaber of which the length was 152,375 bp. This circular genome had a large-single copy (LSC, 83,520 bp), a small-single copy (SSC, 18,523 bp), and two inverted repeat regions (IR, 25,166 bp). There were 80 protein-coding genes, 30 tRNA genes, and four rRNA genes in the chloroplast genome of E. scaber. Phylogenetic analysis inferred from 80 protein-coding regions revealed a close relationship between E. scaber and Cyanthillium cinereum (L.) H.Rob. and a sister relationship between Vernonioideae and Cichorioideae subfamilies. The genomic data of E. scaber provide useful information to explore the molecular evolution of not only Elephantopus genus but also the Asteraceae family. Taylor & Francis 2023-09-04 /pmc/articles/PMC10478624/ /pubmed/37674912 http://dx.doi.org/10.1080/23802359.2023.2252944 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Announcement
Nguyen, Pham Anh Thi
Khang, Do Tan
Nguyen, Pham Thien Trang
Do, Hoang Dang Khoa
The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title_full The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title_fullStr The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title_full_unstemmed The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title_short The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia
title_sort complete chloroplast genome of elephantopus scaber l. (vernonioideae, asteraceae), a useful ethnomedicinal plant in asia
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478624/
https://www.ncbi.nlm.nih.gov/pubmed/37674912
http://dx.doi.org/10.1080/23802359.2023.2252944
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