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Predicted models and CCP4
In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accura...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478639/ https://www.ncbi.nlm.nih.gov/pubmed/37594303 http://dx.doi.org/10.1107/S2059798323006289 |
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author | Simpkin, Adam J. Caballero, Iracema McNicholas, Stuart Stevenson, Kyle Jiménez, Elisabet Sánchez Rodríguez, Filomeno Fando, Maria Uski, Ville Ballard, Charles Chojnowski, Grzegorz Lebedev, Andrey Krissinel, Eugene Usón, Isabel Rigden, Daniel J. Keegan, Ronan M. |
author_facet | Simpkin, Adam J. Caballero, Iracema McNicholas, Stuart Stevenson, Kyle Jiménez, Elisabet Sánchez Rodríguez, Filomeno Fando, Maria Uski, Ville Ballard, Charles Chojnowski, Grzegorz Lebedev, Andrey Krissinel, Eugene Usón, Isabel Rigden, Daniel J. Keegan, Ronan M. |
author_sort | Simpkin, Adam J. |
collection | PubMed |
description | In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accuracy in their predictions was the first instance of a competitor achieving a global distance test score of better than 90 across all categories of difficulty. This achievement represents both a challenge and an opportunity for the field of experimental structural biology. For structure determination by macromolecular X-ray crystallography, access to highly accurate structure predictions is of great benefit, particularly when it comes to solving the phase problem. Here, details of new utilities and enhanced applications in the CCP4 suite, designed to allow users to exploit predicted models in determining macromolecular structures from X-ray diffraction data, are presented. The focus is mainly on applications that can be used to solve the phase problem through molecular replacement. |
format | Online Article Text |
id | pubmed-10478639 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-104786392023-09-06 Predicted models and CCP4 Simpkin, Adam J. Caballero, Iracema McNicholas, Stuart Stevenson, Kyle Jiménez, Elisabet Sánchez Rodríguez, Filomeno Fando, Maria Uski, Ville Ballard, Charles Chojnowski, Grzegorz Lebedev, Andrey Krissinel, Eugene Usón, Isabel Rigden, Daniel J. Keegan, Ronan M. Acta Crystallogr D Struct Biol Ccp4 In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accuracy in their predictions was the first instance of a competitor achieving a global distance test score of better than 90 across all categories of difficulty. This achievement represents both a challenge and an opportunity for the field of experimental structural biology. For structure determination by macromolecular X-ray crystallography, access to highly accurate structure predictions is of great benefit, particularly when it comes to solving the phase problem. Here, details of new utilities and enhanced applications in the CCP4 suite, designed to allow users to exploit predicted models in determining macromolecular structures from X-ray diffraction data, are presented. The focus is mainly on applications that can be used to solve the phase problem through molecular replacement. International Union of Crystallography 2023-08-17 /pmc/articles/PMC10478639/ /pubmed/37594303 http://dx.doi.org/10.1107/S2059798323006289 Text en © Adam J. Simpkin et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Ccp4 Simpkin, Adam J. Caballero, Iracema McNicholas, Stuart Stevenson, Kyle Jiménez, Elisabet Sánchez Rodríguez, Filomeno Fando, Maria Uski, Ville Ballard, Charles Chojnowski, Grzegorz Lebedev, Andrey Krissinel, Eugene Usón, Isabel Rigden, Daniel J. Keegan, Ronan M. Predicted models and CCP4 |
title | Predicted models and CCP4 |
title_full | Predicted models and CCP4 |
title_fullStr | Predicted models and CCP4 |
title_full_unstemmed | Predicted models and CCP4 |
title_short | Predicted models and CCP4 |
title_sort | predicted models and ccp4 |
topic | Ccp4 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478639/ https://www.ncbi.nlm.nih.gov/pubmed/37594303 http://dx.doi.org/10.1107/S2059798323006289 |
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