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Predicted models and CCP4

In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accura...

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Autores principales: Simpkin, Adam J., Caballero, Iracema, McNicholas, Stuart, Stevenson, Kyle, Jiménez, Elisabet, Sánchez Rodríguez, Filomeno, Fando, Maria, Uski, Ville, Ballard, Charles, Chojnowski, Grzegorz, Lebedev, Andrey, Krissinel, Eugene, Usón, Isabel, Rigden, Daniel J., Keegan, Ronan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478639/
https://www.ncbi.nlm.nih.gov/pubmed/37594303
http://dx.doi.org/10.1107/S2059798323006289
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author Simpkin, Adam J.
Caballero, Iracema
McNicholas, Stuart
Stevenson, Kyle
Jiménez, Elisabet
Sánchez Rodríguez, Filomeno
Fando, Maria
Uski, Ville
Ballard, Charles
Chojnowski, Grzegorz
Lebedev, Andrey
Krissinel, Eugene
Usón, Isabel
Rigden, Daniel J.
Keegan, Ronan M.
author_facet Simpkin, Adam J.
Caballero, Iracema
McNicholas, Stuart
Stevenson, Kyle
Jiménez, Elisabet
Sánchez Rodríguez, Filomeno
Fando, Maria
Uski, Ville
Ballard, Charles
Chojnowski, Grzegorz
Lebedev, Andrey
Krissinel, Eugene
Usón, Isabel
Rigden, Daniel J.
Keegan, Ronan M.
author_sort Simpkin, Adam J.
collection PubMed
description In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accuracy in their predictions was the first instance of a competitor achieving a global distance test score of better than 90 across all categories of difficulty. This achievement represents both a challenge and an opportunity for the field of experimental structural biology. For structure determination by macromolecular X-ray crystallography, access to highly accurate structure predictions is of great benefit, particularly when it comes to solving the phase problem. Here, details of new utilities and enhanced applications in the CCP4 suite, designed to allow users to exploit predicted models in determining macromolecular structures from X-ray diffraction data, are presented. The focus is mainly on applications that can be used to solve the phase problem through molecular replacement.
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spelling pubmed-104786392023-09-06 Predicted models and CCP4 Simpkin, Adam J. Caballero, Iracema McNicholas, Stuart Stevenson, Kyle Jiménez, Elisabet Sánchez Rodríguez, Filomeno Fando, Maria Uski, Ville Ballard, Charles Chojnowski, Grzegorz Lebedev, Andrey Krissinel, Eugene Usón, Isabel Rigden, Daniel J. Keegan, Ronan M. Acta Crystallogr D Struct Biol Ccp4 In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward that had been made by Google’s Deepmind in tackling the prediction problem. The level of accuracy in their predictions was the first instance of a competitor achieving a global distance test score of better than 90 across all categories of difficulty. This achievement represents both a challenge and an opportunity for the field of experimental structural biology. For structure determination by macromolecular X-ray crystallography, access to highly accurate structure predictions is of great benefit, particularly when it comes to solving the phase problem. Here, details of new utilities and enhanced applications in the CCP4 suite, designed to allow users to exploit predicted models in determining macromolecular structures from X-ray diffraction data, are presented. The focus is mainly on applications that can be used to solve the phase problem through molecular replacement. International Union of Crystallography 2023-08-17 /pmc/articles/PMC10478639/ /pubmed/37594303 http://dx.doi.org/10.1107/S2059798323006289 Text en © Adam J. Simpkin et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Ccp4
Simpkin, Adam J.
Caballero, Iracema
McNicholas, Stuart
Stevenson, Kyle
Jiménez, Elisabet
Sánchez Rodríguez, Filomeno
Fando, Maria
Uski, Ville
Ballard, Charles
Chojnowski, Grzegorz
Lebedev, Andrey
Krissinel, Eugene
Usón, Isabel
Rigden, Daniel J.
Keegan, Ronan M.
Predicted models and CCP4
title Predicted models and CCP4
title_full Predicted models and CCP4
title_fullStr Predicted models and CCP4
title_full_unstemmed Predicted models and CCP4
title_short Predicted models and CCP4
title_sort predicted models and ccp4
topic Ccp4
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10478639/
https://www.ncbi.nlm.nih.gov/pubmed/37594303
http://dx.doi.org/10.1107/S2059798323006289
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