Cargando…
Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering
Cellular engineered neural tissues have significant potential to improve peripheral nerve repair strategies. Traditional approaches depend on quantifying tissue behaviours using experiments in isolation, presenting a challenge for an overarching framework for tissue design. By comparison, mathematic...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10480012/ https://www.ncbi.nlm.nih.gov/pubmed/37669694 http://dx.doi.org/10.1098/rsif.2023.0258 |
_version_ | 1785101707725766656 |
---|---|
author | Berg, Maxime Eleftheriadou, Despoina Phillips, James B. Shipley, Rebecca J. |
author_facet | Berg, Maxime Eleftheriadou, Despoina Phillips, James B. Shipley, Rebecca J. |
author_sort | Berg, Maxime |
collection | PubMed |
description | Cellular engineered neural tissues have significant potential to improve peripheral nerve repair strategies. Traditional approaches depend on quantifying tissue behaviours using experiments in isolation, presenting a challenge for an overarching framework for tissue design. By comparison, mathematical cell–solute models benchmarked against experimental data enable computational experiments to be performed to test the role of biological/biophysical mechanisms, as well as to explore the impact of different design scenarios and thus accelerate the development of new treatment strategies. Such models generally consist of a set of continuous, coupled, partial differential equations relying on a number of parameters and functional forms. They necessitate dedicated in vitro experiments to be informed, which are seldom available and often involve small datasets with limited spatio-temporal resolution, generating uncertainties. We address this issue and propose a pipeline based on Bayesian inference enabling the derivation of experimentally informed cell–solute models describing therapeutic cell behaviour in nerve tissue engineering. We apply our pipeline to three relevant cell types and obtain models that can readily be used to simulate nerve repair scenarios and quantitatively compare therapeutic cells. Beyond parameter estimation, the proposed pipeline enables model selection as well as experiment utility quantification, aimed at improving both model formulation and experimental design. |
format | Online Article Text |
id | pubmed-10480012 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-104800122023-09-06 Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering Berg, Maxime Eleftheriadou, Despoina Phillips, James B. Shipley, Rebecca J. J R Soc Interface Life Sciences–Engineering interface Cellular engineered neural tissues have significant potential to improve peripheral nerve repair strategies. Traditional approaches depend on quantifying tissue behaviours using experiments in isolation, presenting a challenge for an overarching framework for tissue design. By comparison, mathematical cell–solute models benchmarked against experimental data enable computational experiments to be performed to test the role of biological/biophysical mechanisms, as well as to explore the impact of different design scenarios and thus accelerate the development of new treatment strategies. Such models generally consist of a set of continuous, coupled, partial differential equations relying on a number of parameters and functional forms. They necessitate dedicated in vitro experiments to be informed, which are seldom available and often involve small datasets with limited spatio-temporal resolution, generating uncertainties. We address this issue and propose a pipeline based on Bayesian inference enabling the derivation of experimentally informed cell–solute models describing therapeutic cell behaviour in nerve tissue engineering. We apply our pipeline to three relevant cell types and obtain models that can readily be used to simulate nerve repair scenarios and quantitatively compare therapeutic cells. Beyond parameter estimation, the proposed pipeline enables model selection as well as experiment utility quantification, aimed at improving both model formulation and experimental design. The Royal Society 2023-09-06 /pmc/articles/PMC10480012/ /pubmed/37669694 http://dx.doi.org/10.1098/rsif.2023.0258 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Engineering interface Berg, Maxime Eleftheriadou, Despoina Phillips, James B. Shipley, Rebecca J. Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title | Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title_full | Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title_fullStr | Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title_full_unstemmed | Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title_short | Mathematical modelling with Bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
title_sort | mathematical modelling with bayesian inference to quantitatively characterize therapeutic cell behaviour in nerve tissue engineering |
topic | Life Sciences–Engineering interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10480012/ https://www.ncbi.nlm.nih.gov/pubmed/37669694 http://dx.doi.org/10.1098/rsif.2023.0258 |
work_keys_str_mv | AT bergmaxime mathematicalmodellingwithbayesianinferencetoquantitativelycharacterizetherapeuticcellbehaviourinnervetissueengineering AT eleftheriadoudespoina mathematicalmodellingwithbayesianinferencetoquantitativelycharacterizetherapeuticcellbehaviourinnervetissueengineering AT phillipsjamesb mathematicalmodellingwithbayesianinferencetoquantitativelycharacterizetherapeuticcellbehaviourinnervetissueengineering AT shipleyrebeccaj mathematicalmodellingwithbayesianinferencetoquantitativelycharacterizetherapeuticcellbehaviourinnervetissueengineering |