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The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study

BACKGROUND: Different volume of interest (VOI) sizes influence radiomic features. This study examined if translating images into feature maps before feature sampling could compensate for these effects in liver magnetic resonance imaging (MRI). METHODS: T1- and T2-weighted sequences from three differ...

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Autores principales: Jensen, Laura Jacqueline, Kim, Damon, Elgeti, Thomas, Steffen, Ingo Günter, Schaafs, Lars-Arne, Hamm, Bernd, Nagel, Sebastian Niko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10480134/
https://www.ncbi.nlm.nih.gov/pubmed/37670193
http://dx.doi.org/10.1186/s41747-023-00362-9
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author Jensen, Laura Jacqueline
Kim, Damon
Elgeti, Thomas
Steffen, Ingo Günter
Schaafs, Lars-Arne
Hamm, Bernd
Nagel, Sebastian Niko
author_facet Jensen, Laura Jacqueline
Kim, Damon
Elgeti, Thomas
Steffen, Ingo Günter
Schaafs, Lars-Arne
Hamm, Bernd
Nagel, Sebastian Niko
author_sort Jensen, Laura Jacqueline
collection PubMed
description BACKGROUND: Different volume of interest (VOI) sizes influence radiomic features. This study examined if translating images into feature maps before feature sampling could compensate for these effects in liver magnetic resonance imaging (MRI). METHODS: T1- and T2-weighted sequences from three different scanners (two 3-T scanners, one 1.5-T scanner) of 66 patients with normal abdominal MRI were included retrospectively. Three differently sized VOIs (10, 20, and 30 mm in diameter) were drawn in the liver parenchyma (right lobe), excluding adjacent structures. Ninety-three features were extracted conventionally using PyRadiomics. All images were also converted to 93 parametric feature maps using a pretested software. Agreement between the three VOI sizes was assessed with overall concordance correlation coefficients (OCCCs), while OCCCs > 0.85 were rated reproducible. OCCCs were calculated twice: for the VOI sizes of 10, 20, and 30 mm and for those of 20 and 30 mm. RESULTS: When extracted from original images, only 4 out of the 93 features were reproducible across all VOI sizes in T1- and T2-weighted images. When the smallest VOI was excluded, 5 features (T1-weighted) and 7 features (T2-weighted) were reproducible. Extraction from parametric maps increased the number of reproducible features to 9 (T1- and T2-weighted) across all VOIs. Excluding the 10-mm VOI, reproducibility improved to 16 (T1-weighted) and 55 features (T2-weighted). The stability of all other features also increased in feature maps. CONCLUSIONS: Translating images into parametric maps before feature extraction improves reproducibility across different VOI sizes in normal liver MRI. RELEVANCE STATEMENT: The size of the segmented VOI influences the feature quantity of radiomics, while software-based conversion of images into parametric feature maps before feature sampling improves reproducibility across different VOI sizes in MRI of normal liver tissue. KEY POINTS: • Parametric feature maps can compensate for different VOI sizes. • The effect seems dependent on the VOI sizes and the MRI sequence. • Feature maps can visualize features throughout the entire image stack. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s41747-023-00362-9.
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spelling pubmed-104801342023-09-07 The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study Jensen, Laura Jacqueline Kim, Damon Elgeti, Thomas Steffen, Ingo Günter Schaafs, Lars-Arne Hamm, Bernd Nagel, Sebastian Niko Eur Radiol Exp Original Article BACKGROUND: Different volume of interest (VOI) sizes influence radiomic features. This study examined if translating images into feature maps before feature sampling could compensate for these effects in liver magnetic resonance imaging (MRI). METHODS: T1- and T2-weighted sequences from three different scanners (two 3-T scanners, one 1.5-T scanner) of 66 patients with normal abdominal MRI were included retrospectively. Three differently sized VOIs (10, 20, and 30 mm in diameter) were drawn in the liver parenchyma (right lobe), excluding adjacent structures. Ninety-three features were extracted conventionally using PyRadiomics. All images were also converted to 93 parametric feature maps using a pretested software. Agreement between the three VOI sizes was assessed with overall concordance correlation coefficients (OCCCs), while OCCCs > 0.85 were rated reproducible. OCCCs were calculated twice: for the VOI sizes of 10, 20, and 30 mm and for those of 20 and 30 mm. RESULTS: When extracted from original images, only 4 out of the 93 features were reproducible across all VOI sizes in T1- and T2-weighted images. When the smallest VOI was excluded, 5 features (T1-weighted) and 7 features (T2-weighted) were reproducible. Extraction from parametric maps increased the number of reproducible features to 9 (T1- and T2-weighted) across all VOIs. Excluding the 10-mm VOI, reproducibility improved to 16 (T1-weighted) and 55 features (T2-weighted). The stability of all other features also increased in feature maps. CONCLUSIONS: Translating images into parametric maps before feature extraction improves reproducibility across different VOI sizes in normal liver MRI. RELEVANCE STATEMENT: The size of the segmented VOI influences the feature quantity of radiomics, while software-based conversion of images into parametric feature maps before feature sampling improves reproducibility across different VOI sizes in MRI of normal liver tissue. KEY POINTS: • Parametric feature maps can compensate for different VOI sizes. • The effect seems dependent on the VOI sizes and the MRI sequence. • Feature maps can visualize features throughout the entire image stack. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s41747-023-00362-9. Springer Vienna 2023-09-06 /pmc/articles/PMC10480134/ /pubmed/37670193 http://dx.doi.org/10.1186/s41747-023-00362-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Jensen, Laura Jacqueline
Kim, Damon
Elgeti, Thomas
Steffen, Ingo Günter
Schaafs, Lars-Arne
Hamm, Bernd
Nagel, Sebastian Niko
The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title_full The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title_fullStr The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title_full_unstemmed The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title_short The role of parametric feature maps to correct different volume of interest sizes: an in vivo liver MRI study
title_sort role of parametric feature maps to correct different volume of interest sizes: an in vivo liver mri study
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10480134/
https://www.ncbi.nlm.nih.gov/pubmed/37670193
http://dx.doi.org/10.1186/s41747-023-00362-9
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