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An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma
INTRODUCTION: Immunogenic cell death (ICD) is a form of regulated cell death that activates an adaptive immune response in an immunocompetent host and is particularly sensitive to antigens from tumor cells. Kidney clear cell carcinoma (KIRC) is an immunogenic tumor with extensive tumor heterogeneity...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482408/ https://www.ncbi.nlm.nih.gov/pubmed/37681027 http://dx.doi.org/10.3389/fonc.2023.1147805 |
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author | Wang, Licheng Zhu, Yaru Ren, Zhen Sun, Wenhuizi Wang, Zhijing Zi, Tong Li, Haopeng Zhao, Yan Qin, Xin Gao, Dacheng Zhang, Libo He, Ziyang Le, Wei Wu, Qiang Wu, Gang |
author_facet | Wang, Licheng Zhu, Yaru Ren, Zhen Sun, Wenhuizi Wang, Zhijing Zi, Tong Li, Haopeng Zhao, Yan Qin, Xin Gao, Dacheng Zhang, Libo He, Ziyang Le, Wei Wu, Qiang Wu, Gang |
author_sort | Wang, Licheng |
collection | PubMed |
description | INTRODUCTION: Immunogenic cell death (ICD) is a form of regulated cell death that activates an adaptive immune response in an immunocompetent host and is particularly sensitive to antigens from tumor cells. Kidney clear cell carcinoma (KIRC) is an immunogenic tumor with extensive tumor heterogeneity. However, no reliable predictive biomarkers have been identified to reflect the immune microenvironment and therapeutic response of KIRC. METHODS: Therefore, we used the CIBERSORT and ESTIMATE algorithms to define three ICD clusters based on the expression of ICD-related genes in 661 KIRC patients. Subsequently, we identified three different ICD gene clusters based on the overlap of differentially expressed genes (DEGs) within the ICD clusters. In addition, principal component analysis (PCA) was performed to calculate the ICD scores. RESULTS: The results showed that patients with reduced ICD scores had a poorer prognosis and reduced transcript levels of immune checkpoint genes regulated with T cell differentiation. Furthermore, the ICD score was negatively correlated with the tumor mutation burden (TMB) value of KICD. patients with higher ICD scores showed clinical benefits and advantages of immunotherapy, indicating that the ICD score is an accurate and valid predictor to assess the effect of immunotherapy. DISCUSSION: Overall, our study presents a comprehensive KICD immune-related ICD landscape that can provide guidance for current immunotherapy and predict patient prognosis to help physicians make judgments about the patient’s disease and treatment modalities, and can guide current research on immunotherapy strategies for KICD. |
format | Online Article Text |
id | pubmed-10482408 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104824082023-09-07 An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma Wang, Licheng Zhu, Yaru Ren, Zhen Sun, Wenhuizi Wang, Zhijing Zi, Tong Li, Haopeng Zhao, Yan Qin, Xin Gao, Dacheng Zhang, Libo He, Ziyang Le, Wei Wu, Qiang Wu, Gang Front Oncol Oncology INTRODUCTION: Immunogenic cell death (ICD) is a form of regulated cell death that activates an adaptive immune response in an immunocompetent host and is particularly sensitive to antigens from tumor cells. Kidney clear cell carcinoma (KIRC) is an immunogenic tumor with extensive tumor heterogeneity. However, no reliable predictive biomarkers have been identified to reflect the immune microenvironment and therapeutic response of KIRC. METHODS: Therefore, we used the CIBERSORT and ESTIMATE algorithms to define three ICD clusters based on the expression of ICD-related genes in 661 KIRC patients. Subsequently, we identified three different ICD gene clusters based on the overlap of differentially expressed genes (DEGs) within the ICD clusters. In addition, principal component analysis (PCA) was performed to calculate the ICD scores. RESULTS: The results showed that patients with reduced ICD scores had a poorer prognosis and reduced transcript levels of immune checkpoint genes regulated with T cell differentiation. Furthermore, the ICD score was negatively correlated with the tumor mutation burden (TMB) value of KICD. patients with higher ICD scores showed clinical benefits and advantages of immunotherapy, indicating that the ICD score is an accurate and valid predictor to assess the effect of immunotherapy. DISCUSSION: Overall, our study presents a comprehensive KICD immune-related ICD landscape that can provide guidance for current immunotherapy and predict patient prognosis to help physicians make judgments about the patient’s disease and treatment modalities, and can guide current research on immunotherapy strategies for KICD. Frontiers Media S.A. 2023-08-23 /pmc/articles/PMC10482408/ /pubmed/37681027 http://dx.doi.org/10.3389/fonc.2023.1147805 Text en Copyright © 2023 Wang, Zhu, Ren, Sun, Wang, Zi, Li, Zhao, Qin, Gao, Zhang, He, Le, Wu and Wu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Wang, Licheng Zhu, Yaru Ren, Zhen Sun, Wenhuizi Wang, Zhijing Zi, Tong Li, Haopeng Zhao, Yan Qin, Xin Gao, Dacheng Zhang, Libo He, Ziyang Le, Wei Wu, Qiang Wu, Gang An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title | An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title_full | An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title_fullStr | An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title_full_unstemmed | An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title_short | An immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
title_sort | immunogenic cell death-related classification predicts prognosis and response to immunotherapy in kidney renal clear cell carcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482408/ https://www.ncbi.nlm.nih.gov/pubmed/37681027 http://dx.doi.org/10.3389/fonc.2023.1147805 |
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