Cargando…

Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families

Among the plant molecular mechanisms capable of effectively mitigating the effects of adverse weather conditions, the heat shock proteins (HSPs), a group of chaperones with multiple functions, stand out. At a time of full progress on the omic sciences, they look very promising in the genetic enginee...

Descripción completa

Detalles Bibliográficos
Autores principales: Diogo-Jr., Rubens, de Resende Von Pinho, Edila Vilela, Pinto, Renan Terassi, Zhang, Lingrui, Condori-Apfata, Jorge Alberto, Pereira, Paula Andrade, Vilela, Danielle Rezende
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Nature Singapore 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482818/
https://www.ncbi.nlm.nih.gov/pubmed/37981586
http://dx.doi.org/10.1007/s44154-023-00104-2
_version_ 1785102256942612480
author Diogo-Jr., Rubens
de Resende Von Pinho, Edila Vilela
Pinto, Renan Terassi
Zhang, Lingrui
Condori-Apfata, Jorge Alberto
Pereira, Paula Andrade
Vilela, Danielle Rezende
author_facet Diogo-Jr., Rubens
de Resende Von Pinho, Edila Vilela
Pinto, Renan Terassi
Zhang, Lingrui
Condori-Apfata, Jorge Alberto
Pereira, Paula Andrade
Vilela, Danielle Rezende
author_sort Diogo-Jr., Rubens
collection PubMed
description Among the plant molecular mechanisms capable of effectively mitigating the effects of adverse weather conditions, the heat shock proteins (HSPs), a group of chaperones with multiple functions, stand out. At a time of full progress on the omic sciences, they look very promising in the genetic engineering field, especially in order to conceive superior genotypes, potentially tolerant to abiotic stresses (AbSts). Recently, some works concerning certain families of maize HSPs (ZmHSPs) were published. However, there was still a lack of a study that, with a high degree of criteria, would fully conglomerate them. Using distinct but complementary strategies, we have prospected as many ZmHSPs candidates as possible, gathering more than a thousand accessions. After detailed data mining, we accounted for 182 validated ones, belonging to seven families, which were subcategorized into classes with potential for functional parity. In them, we identified dozens of motifs with some degree of similarity with proteins from different kingdoms, which may help explain some of their still poorly understood means of action. Through in silico and in vitro approaches, we compared their expression levels after controlled exposure to several AbSts' sources, applied at diverse tissues, on varied phenological stages. Based on gene ontology concepts, we still analyzed them from different perspectives of term enrichment. We have also searched, in model plants and close species, for potentially orthologous genes. With all these new insights, which culminated in a plentiful supplementary material, rich in tables, we aim to constitute a fertile consultation source for those maize researchers attracted by these interesting stress proteins. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s44154-023-00104-2.
format Online
Article
Text
id pubmed-10482818
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Springer Nature Singapore
record_format MEDLINE/PubMed
spelling pubmed-104828182023-09-08 Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families Diogo-Jr., Rubens de Resende Von Pinho, Edila Vilela Pinto, Renan Terassi Zhang, Lingrui Condori-Apfata, Jorge Alberto Pereira, Paula Andrade Vilela, Danielle Rezende Stress Biol Original Paper Among the plant molecular mechanisms capable of effectively mitigating the effects of adverse weather conditions, the heat shock proteins (HSPs), a group of chaperones with multiple functions, stand out. At a time of full progress on the omic sciences, they look very promising in the genetic engineering field, especially in order to conceive superior genotypes, potentially tolerant to abiotic stresses (AbSts). Recently, some works concerning certain families of maize HSPs (ZmHSPs) were published. However, there was still a lack of a study that, with a high degree of criteria, would fully conglomerate them. Using distinct but complementary strategies, we have prospected as many ZmHSPs candidates as possible, gathering more than a thousand accessions. After detailed data mining, we accounted for 182 validated ones, belonging to seven families, which were subcategorized into classes with potential for functional parity. In them, we identified dozens of motifs with some degree of similarity with proteins from different kingdoms, which may help explain some of their still poorly understood means of action. Through in silico and in vitro approaches, we compared their expression levels after controlled exposure to several AbSts' sources, applied at diverse tissues, on varied phenological stages. Based on gene ontology concepts, we still analyzed them from different perspectives of term enrichment. We have also searched, in model plants and close species, for potentially orthologous genes. With all these new insights, which culminated in a plentiful supplementary material, rich in tables, we aim to constitute a fertile consultation source for those maize researchers attracted by these interesting stress proteins. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s44154-023-00104-2. Springer Nature Singapore 2023-09-06 /pmc/articles/PMC10482818/ /pubmed/37981586 http://dx.doi.org/10.1007/s44154-023-00104-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Paper
Diogo-Jr., Rubens
de Resende Von Pinho, Edila Vilela
Pinto, Renan Terassi
Zhang, Lingrui
Condori-Apfata, Jorge Alberto
Pereira, Paula Andrade
Vilela, Danielle Rezende
Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title_full Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title_fullStr Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title_full_unstemmed Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title_short Maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different ZmHSP families
title_sort maize heat shock proteins—prospection, validation, categorization and in silico analysis of the different zmhsp families
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482818/
https://www.ncbi.nlm.nih.gov/pubmed/37981586
http://dx.doi.org/10.1007/s44154-023-00104-2
work_keys_str_mv AT diogojrrubens maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT deresendevonpinhoedilavilela maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT pintorenanterassi maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT zhanglingrui maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT condoriapfatajorgealberto maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT pereirapaulaandrade maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies
AT vileladaniellerezende maizeheatshockproteinsprospectionvalidationcategorizationandinsilicoanalysisofthedifferentzmhspfamilies