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Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients

Ovarian cancer (OC) is a disease with difficult early diagnosis and treatment and poor prognosis. OC data profiles were downloaded from The Cancer Genome Atlas. Eight key fatty acid metabolism-related long non-coding RNAs (lncRNAs) were finally screened for building a risk scoring model by univariat...

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Autores principales: Li, Min, Yan, Ye, Liu, Yanyan, Zhao, Jianzhen, Guo, Fei, Chen, Jianqin, Nie, Lifang, Zhang, Yong, Wang, Yingmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482851/
https://www.ncbi.nlm.nih.gov/pubmed/37673886
http://dx.doi.org/10.1038/s41598-023-35218-0
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author Li, Min
Yan, Ye
Liu, Yanyan
Zhao, Jianzhen
Guo, Fei
Chen, Jianqin
Nie, Lifang
Zhang, Yong
Wang, Yingmei
author_facet Li, Min
Yan, Ye
Liu, Yanyan
Zhao, Jianzhen
Guo, Fei
Chen, Jianqin
Nie, Lifang
Zhang, Yong
Wang, Yingmei
author_sort Li, Min
collection PubMed
description Ovarian cancer (OC) is a disease with difficult early diagnosis and treatment and poor prognosis. OC data profiles were downloaded from The Cancer Genome Atlas. Eight key fatty acid metabolism-related long non-coding RNAs (lncRNAs) were finally screened for building a risk scoring model by univariate/ multifactor and least absolute shrinkage and selection operator (LASSO) Cox regression. To make this risk scoring model more applicable to clinical work, we established a nomogram containing the clinical characteristics of OC patients after confirming that the model has good reliability and validity and the ability to distinguish patient prognosis. To further explore how these key lncRNAs are involved in OC progression, we explored their relationship with LUAD immune signatures and tumor drug resistance. The structure shows that the risk scoring model established based on these 8 fatty acid metabolism-related lncRNAs has good reliability and validity and can better predict the prognosis of patients with different risks of OC, and LINC00861in these key RNAs may be a hub gene that affects the progression of OC and closely related to the sensitivity of current OC chemotherapy drugs. In addition, combined with immune signature analysis, we found that patients in the high-risk group are in a state of immunosuppression, and Tfh cells may play an important role in it. We innovatively established a prognostic prediction model with excellent reliability and validity from the perspective of OC fatty acid metabolism reprogramming and lncRNA regulation and found new molecular/cellular targets for future OC treatment.
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spelling pubmed-104828512023-09-08 Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients Li, Min Yan, Ye Liu, Yanyan Zhao, Jianzhen Guo, Fei Chen, Jianqin Nie, Lifang Zhang, Yong Wang, Yingmei Sci Rep Article Ovarian cancer (OC) is a disease with difficult early diagnosis and treatment and poor prognosis. OC data profiles were downloaded from The Cancer Genome Atlas. Eight key fatty acid metabolism-related long non-coding RNAs (lncRNAs) were finally screened for building a risk scoring model by univariate/ multifactor and least absolute shrinkage and selection operator (LASSO) Cox regression. To make this risk scoring model more applicable to clinical work, we established a nomogram containing the clinical characteristics of OC patients after confirming that the model has good reliability and validity and the ability to distinguish patient prognosis. To further explore how these key lncRNAs are involved in OC progression, we explored their relationship with LUAD immune signatures and tumor drug resistance. The structure shows that the risk scoring model established based on these 8 fatty acid metabolism-related lncRNAs has good reliability and validity and can better predict the prognosis of patients with different risks of OC, and LINC00861in these key RNAs may be a hub gene that affects the progression of OC and closely related to the sensitivity of current OC chemotherapy drugs. In addition, combined with immune signature analysis, we found that patients in the high-risk group are in a state of immunosuppression, and Tfh cells may play an important role in it. We innovatively established a prognostic prediction model with excellent reliability and validity from the perspective of OC fatty acid metabolism reprogramming and lncRNA regulation and found new molecular/cellular targets for future OC treatment. Nature Publishing Group UK 2023-09-06 /pmc/articles/PMC10482851/ /pubmed/37673886 http://dx.doi.org/10.1038/s41598-023-35218-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Min
Yan, Ye
Liu, Yanyan
Zhao, Jianzhen
Guo, Fei
Chen, Jianqin
Nie, Lifang
Zhang, Yong
Wang, Yingmei
Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title_full Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title_fullStr Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title_full_unstemmed Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title_short Comprehensive analyses of fatty acid metabolism-related lncRNA for ovarian cancer patients
title_sort comprehensive analyses of fatty acid metabolism-related lncrna for ovarian cancer patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482851/
https://www.ncbi.nlm.nih.gov/pubmed/37673886
http://dx.doi.org/10.1038/s41598-023-35218-0
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