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A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati
Hymenoptera is an order accounting for a large proportion of species in Insecta, among which Chalcidoidea contains many parasitoid species of biocontrol significance. Currently, some species genomes in Chalcidoidea have been assembled, but the chromosome-level genomes of Aphelinidae are not yet avai...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482854/ https://www.ncbi.nlm.nih.gov/pubmed/37673910 http://dx.doi.org/10.1038/s41597-023-02450-2 |
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author | Zhong, Yu-Wei Fan, Yun-Yun Zuo, Zhang-Qi Shu, Run-Guo Liu, Yin-Quan Luan, Jun-Bo Li, Fei Liu, Shu-Sheng |
author_facet | Zhong, Yu-Wei Fan, Yun-Yun Zuo, Zhang-Qi Shu, Run-Guo Liu, Yin-Quan Luan, Jun-Bo Li, Fei Liu, Shu-Sheng |
author_sort | Zhong, Yu-Wei |
collection | PubMed |
description | Hymenoptera is an order accounting for a large proportion of species in Insecta, among which Chalcidoidea contains many parasitoid species of biocontrol significance. Currently, some species genomes in Chalcidoidea have been assembled, but the chromosome-level genomes of Aphelinidae are not yet available. Using Illumina, PacBio HiFi and Hi-C technologies, we assembled a genome assembly of Eretmocerus hayati (Aphelinidae, Hymenoptera), a worldwide biocontrol agent of whiteflies, at the chromosome level. The assembled genome size is 692.1 Mb with a contig N50 of 7.96 Mb. After Hi-C scaffolding, the contigs was assembled onto four chromosomes with a mapping rate of > 98%. The scaffold N50 length is 192.5 Mb, and Benchmarking Universal Single-Copy Orthologues (BUSCO) value is 95.9%. The genome contains 370.8 Mb repeat sequences and total of 24471 protein coding genes. P450 gene families were identified and analyzed. In conclusion, our chromosome-level genome assembly provides valuable support for future research on the evolution of parasitoid wasps and the interaction between hosts and parasitoid wasps. |
format | Online Article Text |
id | pubmed-10482854 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104828542023-09-08 A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati Zhong, Yu-Wei Fan, Yun-Yun Zuo, Zhang-Qi Shu, Run-Guo Liu, Yin-Quan Luan, Jun-Bo Li, Fei Liu, Shu-Sheng Sci Data Data Descriptor Hymenoptera is an order accounting for a large proportion of species in Insecta, among which Chalcidoidea contains many parasitoid species of biocontrol significance. Currently, some species genomes in Chalcidoidea have been assembled, but the chromosome-level genomes of Aphelinidae are not yet available. Using Illumina, PacBio HiFi and Hi-C technologies, we assembled a genome assembly of Eretmocerus hayati (Aphelinidae, Hymenoptera), a worldwide biocontrol agent of whiteflies, at the chromosome level. The assembled genome size is 692.1 Mb with a contig N50 of 7.96 Mb. After Hi-C scaffolding, the contigs was assembled onto four chromosomes with a mapping rate of > 98%. The scaffold N50 length is 192.5 Mb, and Benchmarking Universal Single-Copy Orthologues (BUSCO) value is 95.9%. The genome contains 370.8 Mb repeat sequences and total of 24471 protein coding genes. P450 gene families were identified and analyzed. In conclusion, our chromosome-level genome assembly provides valuable support for future research on the evolution of parasitoid wasps and the interaction between hosts and parasitoid wasps. Nature Publishing Group UK 2023-09-06 /pmc/articles/PMC10482854/ /pubmed/37673910 http://dx.doi.org/10.1038/s41597-023-02450-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Zhong, Yu-Wei Fan, Yun-Yun Zuo, Zhang-Qi Shu, Run-Guo Liu, Yin-Quan Luan, Jun-Bo Li, Fei Liu, Shu-Sheng A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title | A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title_full | A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title_fullStr | A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title_full_unstemmed | A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title_short | A chromosome-level genome assembly of the parasitoid wasp Eretmocerus hayati |
title_sort | chromosome-level genome assembly of the parasitoid wasp eretmocerus hayati |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482854/ https://www.ncbi.nlm.nih.gov/pubmed/37673910 http://dx.doi.org/10.1038/s41597-023-02450-2 |
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