Cargando…

Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique

In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optim...

Descripción completa

Detalles Bibliográficos
Autores principales: Han, Ho Le, Nurcahyanto, Dian Alfian, Muhammad, Neak, Lee, Yong-Jae, Nguyen, Tra T. H., Kim, Song-Gun, Chan, Sook Sin, Khoo, Kuan Shiong, Chew, Kit Wayne, Show, Pau Loke, Tran, Thi Ngoc Thu, Nguyen, Thi Dong Phuong, Chiu, Chen Yaw
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482864/
https://www.ncbi.nlm.nih.gov/pubmed/37673882
http://dx.doi.org/10.1038/s41598-023-35108-5
_version_ 1785102264864604160
author Han, Ho Le
Nurcahyanto, Dian Alfian
Muhammad, Neak
Lee, Yong-Jae
Nguyen, Tra T. H.
Kim, Song-Gun
Chan, Sook Sin
Khoo, Kuan Shiong
Chew, Kit Wayne
Show, Pau Loke
Tran, Thi Ngoc Thu
Nguyen, Thi Dong Phuong
Chiu, Chen Yaw
author_facet Han, Ho Le
Nurcahyanto, Dian Alfian
Muhammad, Neak
Lee, Yong-Jae
Nguyen, Tra T. H.
Kim, Song-Gun
Chan, Sook Sin
Khoo, Kuan Shiong
Chew, Kit Wayne
Show, Pau Loke
Tran, Thi Ngoc Thu
Nguyen, Thi Dong Phuong
Chiu, Chen Yaw
author_sort Han, Ho Le
collection PubMed
description In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optimally at 25 °C, pH 6–7, and the strain tolerates 1% (w/v) NaCl concentration. The complete genome of strain PL0132(T) comprises one contig with a sequencing depth of 76×, consisting of 8,853,064 base pairs and the genomic DNA G + C content was 46.7% (genome). 16S rRNA gene sequence analysis revealed that strain PL0132(T) represents a member of the phylum Bacteroidetes and is affiliated with the genus Spirosoma. Based on genomic, phenotypic, and chemotaxonomic characteristics, the strain PL0132(T) represents a novel species of the genus Spirosoma, for which the name Spirosoma foliorum sp. nov. is proposed (= KCTC 72228( T) = InaCC B1447(T)).
format Online
Article
Text
id pubmed-10482864
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-104828642023-09-08 Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique Han, Ho Le Nurcahyanto, Dian Alfian Muhammad, Neak Lee, Yong-Jae Nguyen, Tra T. H. Kim, Song-Gun Chan, Sook Sin Khoo, Kuan Shiong Chew, Kit Wayne Show, Pau Loke Tran, Thi Ngoc Thu Nguyen, Thi Dong Phuong Chiu, Chen Yaw Sci Rep Article In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optimally at 25 °C, pH 6–7, and the strain tolerates 1% (w/v) NaCl concentration. The complete genome of strain PL0132(T) comprises one contig with a sequencing depth of 76×, consisting of 8,853,064 base pairs and the genomic DNA G + C content was 46.7% (genome). 16S rRNA gene sequence analysis revealed that strain PL0132(T) represents a member of the phylum Bacteroidetes and is affiliated with the genus Spirosoma. Based on genomic, phenotypic, and chemotaxonomic characteristics, the strain PL0132(T) represents a novel species of the genus Spirosoma, for which the name Spirosoma foliorum sp. nov. is proposed (= KCTC 72228( T) = InaCC B1447(T)). Nature Publishing Group UK 2023-09-06 /pmc/articles/PMC10482864/ /pubmed/37673882 http://dx.doi.org/10.1038/s41598-023-35108-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Han, Ho Le
Nurcahyanto, Dian Alfian
Muhammad, Neak
Lee, Yong-Jae
Nguyen, Tra T. H.
Kim, Song-Gun
Chan, Sook Sin
Khoo, Kuan Shiong
Chew, Kit Wayne
Show, Pau Loke
Tran, Thi Ngoc Thu
Nguyen, Thi Dong Phuong
Chiu, Chen Yaw
Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title_full Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title_fullStr Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title_full_unstemmed Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title_short Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
title_sort isolation of spirosoma foliorum sp. nov. from the fallen leaf of acer palmatum by a novel cultivation technique
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482864/
https://www.ncbi.nlm.nih.gov/pubmed/37673882
http://dx.doi.org/10.1038/s41598-023-35108-5
work_keys_str_mv AT hanhole isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT nurcahyantodianalfian isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT muhammadneak isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT leeyongjae isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT nguyentrath isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT kimsonggun isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT chansooksin isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT khookuanshiong isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT chewkitwayne isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT showpauloke isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT tranthingocthu isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT nguyenthidongphuong isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique
AT chiuchenyaw isolationofspirosomafoliorumspnovfromthefallenleafofacerpalmatumbyanovelcultivationtechnique