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Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optim...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482864/ https://www.ncbi.nlm.nih.gov/pubmed/37673882 http://dx.doi.org/10.1038/s41598-023-35108-5 |
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author | Han, Ho Le Nurcahyanto, Dian Alfian Muhammad, Neak Lee, Yong-Jae Nguyen, Tra T. H. Kim, Song-Gun Chan, Sook Sin Khoo, Kuan Shiong Chew, Kit Wayne Show, Pau Loke Tran, Thi Ngoc Thu Nguyen, Thi Dong Phuong Chiu, Chen Yaw |
author_facet | Han, Ho Le Nurcahyanto, Dian Alfian Muhammad, Neak Lee, Yong-Jae Nguyen, Tra T. H. Kim, Song-Gun Chan, Sook Sin Khoo, Kuan Shiong Chew, Kit Wayne Show, Pau Loke Tran, Thi Ngoc Thu Nguyen, Thi Dong Phuong Chiu, Chen Yaw |
author_sort | Han, Ho Le |
collection | PubMed |
description | In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optimally at 25 °C, pH 6–7, and the strain tolerates 1% (w/v) NaCl concentration. The complete genome of strain PL0132(T) comprises one contig with a sequencing depth of 76×, consisting of 8,853,064 base pairs and the genomic DNA G + C content was 46.7% (genome). 16S rRNA gene sequence analysis revealed that strain PL0132(T) represents a member of the phylum Bacteroidetes and is affiliated with the genus Spirosoma. Based on genomic, phenotypic, and chemotaxonomic characteristics, the strain PL0132(T) represents a novel species of the genus Spirosoma, for which the name Spirosoma foliorum sp. nov. is proposed (= KCTC 72228( T) = InaCC B1447(T)). |
format | Online Article Text |
id | pubmed-10482864 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104828642023-09-08 Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique Han, Ho Le Nurcahyanto, Dian Alfian Muhammad, Neak Lee, Yong-Jae Nguyen, Tra T. H. Kim, Song-Gun Chan, Sook Sin Khoo, Kuan Shiong Chew, Kit Wayne Show, Pau Loke Tran, Thi Ngoc Thu Nguyen, Thi Dong Phuong Chiu, Chen Yaw Sci Rep Article In the effort of isolating novel microbial species, the strain PL0132(T) was isolated from a fallen leaf under fresh water at a stream, which glided when grown on a tap water medium (without nutrients). The strain was determined to be Gram-negative, strictly aerobic, and rod-shaped, which grew optimally at 25 °C, pH 6–7, and the strain tolerates 1% (w/v) NaCl concentration. The complete genome of strain PL0132(T) comprises one contig with a sequencing depth of 76×, consisting of 8,853,064 base pairs and the genomic DNA G + C content was 46.7% (genome). 16S rRNA gene sequence analysis revealed that strain PL0132(T) represents a member of the phylum Bacteroidetes and is affiliated with the genus Spirosoma. Based on genomic, phenotypic, and chemotaxonomic characteristics, the strain PL0132(T) represents a novel species of the genus Spirosoma, for which the name Spirosoma foliorum sp. nov. is proposed (= KCTC 72228( T) = InaCC B1447(T)). Nature Publishing Group UK 2023-09-06 /pmc/articles/PMC10482864/ /pubmed/37673882 http://dx.doi.org/10.1038/s41598-023-35108-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Han, Ho Le Nurcahyanto, Dian Alfian Muhammad, Neak Lee, Yong-Jae Nguyen, Tra T. H. Kim, Song-Gun Chan, Sook Sin Khoo, Kuan Shiong Chew, Kit Wayne Show, Pau Loke Tran, Thi Ngoc Thu Nguyen, Thi Dong Phuong Chiu, Chen Yaw Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title | Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title_full | Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title_fullStr | Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title_full_unstemmed | Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title_short | Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique |
title_sort | isolation of spirosoma foliorum sp. nov. from the fallen leaf of acer palmatum by a novel cultivation technique |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10482864/ https://www.ncbi.nlm.nih.gov/pubmed/37673882 http://dx.doi.org/10.1038/s41598-023-35108-5 |
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