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The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide
The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-dimethoxypyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl g...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10483549/ https://www.ncbi.nlm.nih.gov/pubmed/37693664 http://dx.doi.org/10.1107/S2056989023006837 |
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author | Mocilac, Pavle Pohl, Fabian Gallagher, John F. |
author_facet | Mocilac, Pavle Pohl, Fabian Gallagher, John F. |
author_sort | Mocilac, Pavle |
collection | PubMed |
description | The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-dimethoxypyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl groups at each successive dicarbonyl(pyridine) moiety adopt the (syn/anti)(2) conformation. This contrasts with all previously reported tetraimide macrocycles, which exhibit the (syn)(4) conformation. The effect is to close any potential cavity or niche by having two of the central pyridine C(5)N rings aligned close to each other [with closest pyridine Cg⋯Cg ring centroid separations of 3.5775 (19) Å; closest C⋯C = 3.467 (5) Å]. A partial occupancy water molecule (with s.o.f. = 0.167), resides with its oxygen atom on a twofold axis at hydrogen-bonding distances to the carbonyl O atom, in a molecular niche between two pyridine rings. Macrocyles of (I) have all six C=O groups and all eight methoxy O atoms present on the macrocycle surface. However, all twelve N atoms are effectively shielded on steric grounds from any potential intermolecular interactions. The remaining two C=O O atoms interact with the partial occupancy water molecule via two O—H⋯O=C hydrogen bonds. Macrocycles of (I) stack as one-dimensional chains along the b-axis direction with primary intermolecular interactions involving weak C—H⋯O=C/OCH(3)/H(2)O contacts. Chains interlock weakly via methoxy–methoxy C—H⋯O interactions into two-dimensional sheets. |
format | Online Article Text |
id | pubmed-10483549 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-104835492023-09-08 The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide Mocilac, Pavle Pohl, Fabian Gallagher, John F. Acta Crystallogr E Crystallogr Commun Research Communications The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-dimethoxypyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl groups at each successive dicarbonyl(pyridine) moiety adopt the (syn/anti)(2) conformation. This contrasts with all previously reported tetraimide macrocycles, which exhibit the (syn)(4) conformation. The effect is to close any potential cavity or niche by having two of the central pyridine C(5)N rings aligned close to each other [with closest pyridine Cg⋯Cg ring centroid separations of 3.5775 (19) Å; closest C⋯C = 3.467 (5) Å]. A partial occupancy water molecule (with s.o.f. = 0.167), resides with its oxygen atom on a twofold axis at hydrogen-bonding distances to the carbonyl O atom, in a molecular niche between two pyridine rings. Macrocyles of (I) have all six C=O groups and all eight methoxy O atoms present on the macrocycle surface. However, all twelve N atoms are effectively shielded on steric grounds from any potential intermolecular interactions. The remaining two C=O O atoms interact with the partial occupancy water molecule via two O—H⋯O=C hydrogen bonds. Macrocycles of (I) stack as one-dimensional chains along the b-axis direction with primary intermolecular interactions involving weak C—H⋯O=C/OCH(3)/H(2)O contacts. Chains interlock weakly via methoxy–methoxy C—H⋯O interactions into two-dimensional sheets. International Union of Crystallography 2023-08-23 /pmc/articles/PMC10483549/ /pubmed/37693664 http://dx.doi.org/10.1107/S2056989023006837 Text en © Mocilac et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Communications Mocilac, Pavle Pohl, Fabian Gallagher, John F. The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title | The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title_full | The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title_fullStr | The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title_full_unstemmed | The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title_short | The unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
title_sort | unusual (syn-/anti-)(2) conformation of a dimethoxypyrimidyl-based tennimide |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10483549/ https://www.ncbi.nlm.nih.gov/pubmed/37693664 http://dx.doi.org/10.1107/S2056989023006837 |
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