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The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide

The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-di­meth­oxy­pyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl g...

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Autores principales: Mocilac, Pavle, Pohl, Fabian, Gallagher, John F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10483549/
https://www.ncbi.nlm.nih.gov/pubmed/37693664
http://dx.doi.org/10.1107/S2056989023006837
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author Mocilac, Pavle
Pohl, Fabian
Gallagher, John F.
author_facet Mocilac, Pavle
Pohl, Fabian
Gallagher, John F.
author_sort Mocilac, Pavle
collection PubMed
description The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-di­meth­oxy­pyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl groups at each successive dicarbon­yl(pyridine) moiety adopt the (syn/anti)(2) conformation. This contrasts with all previously reported tetra­imide macrocycles, which exhibit the (syn)(4) conformation. The effect is to close any potential cavity or niche by having two of the central pyridine C(5)N rings aligned close to each other [with closest pyridine Cg⋯Cg ring centroid separations of 3.5775 (19) Å; closest C⋯C = 3.467 (5) Å]. A partial occupancy water mol­ecule (with s.o.f. = 0.167), resides with its oxygen atom on a twofold axis at hydrogen-bonding distances to the carbonyl O atom, in a mol­ecular niche between two pyridine rings. Macrocyles of (I) have all six C=O groups and all eight meth­oxy O atoms present on the macrocycle surface. However, all twelve N atoms are effectively shielded on steric grounds from any potential inter­molecular inter­actions. The remaining two C=O O atoms inter­act with the partial occupancy water mol­ecule via two O—H⋯O=C hydrogen bonds. Macrocycles of (I) stack as one-dimensional chains along the b-axis direction with primary inter­molecular inter­actions involving weak C—H⋯O=C/OCH(3)/H(2)O contacts. Chains inter­lock weakly via meth­oxy–meth­oxy C—H⋯O inter­actions into two-dimensional sheets.
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spelling pubmed-104835492023-09-08 The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide Mocilac, Pavle Pohl, Fabian Gallagher, John F. Acta Crystallogr E Crystallogr Commun Research Communications The tennimide macrocycle, (I) (C(52)H(40)N(16)O(16).0.167H(2)O), was synthesized from 2-amino-4,6-di­meth­oxy­pyrimidine and pyridine-2,6-dicarbonyl dichloride. Compound (I) represents the first tennimide incorporating pyridine rings in the macrocycle scaffold. In the macrocycle ring, the carbonyl groups at each successive dicarbon­yl(pyridine) moiety adopt the (syn/anti)(2) conformation. This contrasts with all previously reported tetra­imide macrocycles, which exhibit the (syn)(4) conformation. The effect is to close any potential cavity or niche by having two of the central pyridine C(5)N rings aligned close to each other [with closest pyridine Cg⋯Cg ring centroid separations of 3.5775 (19) Å; closest C⋯C = 3.467 (5) Å]. A partial occupancy water mol­ecule (with s.o.f. = 0.167), resides with its oxygen atom on a twofold axis at hydrogen-bonding distances to the carbonyl O atom, in a mol­ecular niche between two pyridine rings. Macrocyles of (I) have all six C=O groups and all eight meth­oxy O atoms present on the macrocycle surface. However, all twelve N atoms are effectively shielded on steric grounds from any potential inter­molecular inter­actions. The remaining two C=O O atoms inter­act with the partial occupancy water mol­ecule via two O—H⋯O=C hydrogen bonds. Macrocycles of (I) stack as one-dimensional chains along the b-axis direction with primary inter­molecular inter­actions involving weak C—H⋯O=C/OCH(3)/H(2)O contacts. Chains inter­lock weakly via meth­oxy–meth­oxy C—H⋯O inter­actions into two-dimensional sheets. International Union of Crystallography 2023-08-23 /pmc/articles/PMC10483549/ /pubmed/37693664 http://dx.doi.org/10.1107/S2056989023006837 Text en © Mocilac et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Mocilac, Pavle
Pohl, Fabian
Gallagher, John F.
The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title_full The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title_fullStr The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title_full_unstemmed The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title_short The unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
title_sort unusual (syn-/anti-)(2) conformation of a di­meth­oxy­pyrimidyl-based tennimide
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10483549/
https://www.ncbi.nlm.nih.gov/pubmed/37693664
http://dx.doi.org/10.1107/S2056989023006837
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