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Spatial assessments in texture analysis: what the radiologist needs to know

To date, studies investigating radiomics-based predictive models have tended to err on the side of data-driven or exploratory analysis of many thousands of extracted features. In particular, spatial assessments of texture have proven to be especially adept at assessing for features of intratumoral h...

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Autores principales: Varghese, Bino A., Fields, Brandon K. K., Hwang, Darryl H., Duddalwar, Vinay A., Matcuk, George R., Cen, Steven Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10484588/
https://www.ncbi.nlm.nih.gov/pubmed/37693924
http://dx.doi.org/10.3389/fradi.2023.1240544
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author Varghese, Bino A.
Fields, Brandon K. K.
Hwang, Darryl H.
Duddalwar, Vinay A.
Matcuk, George R.
Cen, Steven Y.
author_facet Varghese, Bino A.
Fields, Brandon K. K.
Hwang, Darryl H.
Duddalwar, Vinay A.
Matcuk, George R.
Cen, Steven Y.
author_sort Varghese, Bino A.
collection PubMed
description To date, studies investigating radiomics-based predictive models have tended to err on the side of data-driven or exploratory analysis of many thousands of extracted features. In particular, spatial assessments of texture have proven to be especially adept at assessing for features of intratumoral heterogeneity in oncologic imaging, which likewise may correspond with tumor biology and behavior. These spatial assessments can be generally classified as spatial filters, which detect areas of rapid change within the grayscale in order to enhance edges and/or textures within an image, or neighborhood-based methods, which quantify gray-level differences of neighboring pixels/voxels within a set distance. Given the high dimensionality of radiomics datasets, data dimensionality reduction methods have been proposed in an attempt to optimize model performance in machine learning studies; however, it should be noted that these approaches should only be applied to training data in order to avoid information leakage and model overfitting. While area under the curve of the receiver operating characteristic is perhaps the most commonly reported assessment of model performance, it is prone to overestimation when output classifications are unbalanced. In such cases, confusion matrices may be additionally reported, whereby diagnostic cut points for model predicted probability may hold more clinical significance to clinical colleagues with respect to related forms of diagnostic testing.
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spelling pubmed-104845882023-09-08 Spatial assessments in texture analysis: what the radiologist needs to know Varghese, Bino A. Fields, Brandon K. K. Hwang, Darryl H. Duddalwar, Vinay A. Matcuk, George R. Cen, Steven Y. Front Radiol Radiology To date, studies investigating radiomics-based predictive models have tended to err on the side of data-driven or exploratory analysis of many thousands of extracted features. In particular, spatial assessments of texture have proven to be especially adept at assessing for features of intratumoral heterogeneity in oncologic imaging, which likewise may correspond with tumor biology and behavior. These spatial assessments can be generally classified as spatial filters, which detect areas of rapid change within the grayscale in order to enhance edges and/or textures within an image, or neighborhood-based methods, which quantify gray-level differences of neighboring pixels/voxels within a set distance. Given the high dimensionality of radiomics datasets, data dimensionality reduction methods have been proposed in an attempt to optimize model performance in machine learning studies; however, it should be noted that these approaches should only be applied to training data in order to avoid information leakage and model overfitting. While area under the curve of the receiver operating characteristic is perhaps the most commonly reported assessment of model performance, it is prone to overestimation when output classifications are unbalanced. In such cases, confusion matrices may be additionally reported, whereby diagnostic cut points for model predicted probability may hold more clinical significance to clinical colleagues with respect to related forms of diagnostic testing. Frontiers Media S.A. 2023-08-24 /pmc/articles/PMC10484588/ /pubmed/37693924 http://dx.doi.org/10.3389/fradi.2023.1240544 Text en © 2023 Varghese, Fields, Hwang, Duddalwar, Matcuk and Cen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Radiology
Varghese, Bino A.
Fields, Brandon K. K.
Hwang, Darryl H.
Duddalwar, Vinay A.
Matcuk, George R.
Cen, Steven Y.
Spatial assessments in texture analysis: what the radiologist needs to know
title Spatial assessments in texture analysis: what the radiologist needs to know
title_full Spatial assessments in texture analysis: what the radiologist needs to know
title_fullStr Spatial assessments in texture analysis: what the radiologist needs to know
title_full_unstemmed Spatial assessments in texture analysis: what the radiologist needs to know
title_short Spatial assessments in texture analysis: what the radiologist needs to know
title_sort spatial assessments in texture analysis: what the radiologist needs to know
topic Radiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10484588/
https://www.ncbi.nlm.nih.gov/pubmed/37693924
http://dx.doi.org/10.3389/fradi.2023.1240544
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