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Targeted RNA condensation in living cells via genetically encodable triplet repeat tags

Living systems contain various membraneless organelles that segregate proteins and RNAs via liquid–liquid phase separation. Inspired by nature, many protein-based synthetic compartments have been engineered in vitro and in living cells. Here, we introduce a genetically encoded CAG-repeat RNA tag to...

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Autores principales: Xue, Zhaolin, Ren, Kewei, Wu, Rigumula, Sun, Zhining, Zheng, Ru, Tian, Qian, Ali, Ahsan Ausaf, Mi, Lan, You, Mingxu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10484661/
https://www.ncbi.nlm.nih.gov/pubmed/37486784
http://dx.doi.org/10.1093/nar/gkad621
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author Xue, Zhaolin
Ren, Kewei
Wu, Rigumula
Sun, Zhining
Zheng, Ru
Tian, Qian
Ali, Ahsan Ausaf
Mi, Lan
You, Mingxu
author_facet Xue, Zhaolin
Ren, Kewei
Wu, Rigumula
Sun, Zhining
Zheng, Ru
Tian, Qian
Ali, Ahsan Ausaf
Mi, Lan
You, Mingxu
author_sort Xue, Zhaolin
collection PubMed
description Living systems contain various membraneless organelles that segregate proteins and RNAs via liquid–liquid phase separation. Inspired by nature, many protein-based synthetic compartments have been engineered in vitro and in living cells. Here, we introduce a genetically encoded CAG-repeat RNA tag to reprogram cellular condensate formation and recruit various non-phase-transition RNAs for cellular modulation. With the help of fluorogenic RNA aptamers, we have systematically studied the formation dynamics, spatial distributions, sizes and densities of these cellular RNA condensates. The cis- and trans-regulation functions of these CAG-repeat tags in cellular RNA localization, life time, RNA–protein interactions and gene expression have also been investigated. Considering the importance of RNA condensation in health and disease, we expect that these genetically encodable modular and self-assembled tags can be widely used for chemical biology and synthetic biology studies.
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spelling pubmed-104846612023-09-08 Targeted RNA condensation in living cells via genetically encodable triplet repeat tags Xue, Zhaolin Ren, Kewei Wu, Rigumula Sun, Zhining Zheng, Ru Tian, Qian Ali, Ahsan Ausaf Mi, Lan You, Mingxu Nucleic Acids Res Chemical Biology and Nucleic Acid Chemistry Living systems contain various membraneless organelles that segregate proteins and RNAs via liquid–liquid phase separation. Inspired by nature, many protein-based synthetic compartments have been engineered in vitro and in living cells. Here, we introduce a genetically encoded CAG-repeat RNA tag to reprogram cellular condensate formation and recruit various non-phase-transition RNAs for cellular modulation. With the help of fluorogenic RNA aptamers, we have systematically studied the formation dynamics, spatial distributions, sizes and densities of these cellular RNA condensates. The cis- and trans-regulation functions of these CAG-repeat tags in cellular RNA localization, life time, RNA–protein interactions and gene expression have also been investigated. Considering the importance of RNA condensation in health and disease, we expect that these genetically encodable modular and self-assembled tags can be widely used for chemical biology and synthetic biology studies. Oxford University Press 2023-07-24 /pmc/articles/PMC10484661/ /pubmed/37486784 http://dx.doi.org/10.1093/nar/gkad621 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Chemical Biology and Nucleic Acid Chemistry
Xue, Zhaolin
Ren, Kewei
Wu, Rigumula
Sun, Zhining
Zheng, Ru
Tian, Qian
Ali, Ahsan Ausaf
Mi, Lan
You, Mingxu
Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title_full Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title_fullStr Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title_full_unstemmed Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title_short Targeted RNA condensation in living cells via genetically encodable triplet repeat tags
title_sort targeted rna condensation in living cells via genetically encodable triplet repeat tags
topic Chemical Biology and Nucleic Acid Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10484661/
https://www.ncbi.nlm.nih.gov/pubmed/37486784
http://dx.doi.org/10.1093/nar/gkad621
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