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Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy

Modern scanning microscopes can image materials with up to sub-atomic spatial and sub-picosecond time resolutions, but these capabilities come with large volumes of data, which can be difficult to store and analyze. We report the Fast Autonomous Scanning Toolkit (FAST) that addresses this challenge...

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Autores principales: Kandel, Saugat, Zhou, Tao, Babu, Anakha V., Di, Zichao, Li, Xinxin, Ma, Xuedan, Holt, Martin, Miceli, Antonino, Phatak, Charudatta, Cherukara, Mathew J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485018/
https://www.ncbi.nlm.nih.gov/pubmed/37679317
http://dx.doi.org/10.1038/s41467-023-40339-1
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author Kandel, Saugat
Zhou, Tao
Babu, Anakha V.
Di, Zichao
Li, Xinxin
Ma, Xuedan
Holt, Martin
Miceli, Antonino
Phatak, Charudatta
Cherukara, Mathew J.
author_facet Kandel, Saugat
Zhou, Tao
Babu, Anakha V.
Di, Zichao
Li, Xinxin
Ma, Xuedan
Holt, Martin
Miceli, Antonino
Phatak, Charudatta
Cherukara, Mathew J.
author_sort Kandel, Saugat
collection PubMed
description Modern scanning microscopes can image materials with up to sub-atomic spatial and sub-picosecond time resolutions, but these capabilities come with large volumes of data, which can be difficult to store and analyze. We report the Fast Autonomous Scanning Toolkit (FAST) that addresses this challenge by combining a neural network, route optimization, and efficient hardware controls to enable a self-driving experiment that actively identifies and measures a sparse but representative data subset in lieu of the full dataset. FAST requires no prior information about the sample, is computationally efficient, and uses generic hardware controls with minimal experiment-specific wrapping. We test FAST in simulations and a dark-field X-ray microscopy experiment of a WSe(2) film. Our studies show that a FAST scan of <25% is sufficient to accurately image and analyze the sample. FAST is easy to adapt for any scanning microscope; its broad adoption will empower general multi-level studies of materials evolution with respect to time, temperature, or other parameters.
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spelling pubmed-104850182023-09-09 Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy Kandel, Saugat Zhou, Tao Babu, Anakha V. Di, Zichao Li, Xinxin Ma, Xuedan Holt, Martin Miceli, Antonino Phatak, Charudatta Cherukara, Mathew J. Nat Commun Article Modern scanning microscopes can image materials with up to sub-atomic spatial and sub-picosecond time resolutions, but these capabilities come with large volumes of data, which can be difficult to store and analyze. We report the Fast Autonomous Scanning Toolkit (FAST) that addresses this challenge by combining a neural network, route optimization, and efficient hardware controls to enable a self-driving experiment that actively identifies and measures a sparse but representative data subset in lieu of the full dataset. FAST requires no prior information about the sample, is computationally efficient, and uses generic hardware controls with minimal experiment-specific wrapping. We test FAST in simulations and a dark-field X-ray microscopy experiment of a WSe(2) film. Our studies show that a FAST scan of <25% is sufficient to accurately image and analyze the sample. FAST is easy to adapt for any scanning microscope; its broad adoption will empower general multi-level studies of materials evolution with respect to time, temperature, or other parameters. Nature Publishing Group UK 2023-09-07 /pmc/articles/PMC10485018/ /pubmed/37679317 http://dx.doi.org/10.1038/s41467-023-40339-1 Text en © UChicago Argonne, LLC, Operator of Argonne National Laboratory 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kandel, Saugat
Zhou, Tao
Babu, Anakha V.
Di, Zichao
Li, Xinxin
Ma, Xuedan
Holt, Martin
Miceli, Antonino
Phatak, Charudatta
Cherukara, Mathew J.
Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title_full Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title_fullStr Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title_full_unstemmed Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title_short Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
title_sort demonstration of an ai-driven workflow for autonomous high-resolution scanning microscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485018/
https://www.ncbi.nlm.nih.gov/pubmed/37679317
http://dx.doi.org/10.1038/s41467-023-40339-1
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