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Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion
Over the decades, the integrated modeling (IM) environment for magnetically confined fusion has evolved from a single, isolated, proprietary numerical computing software to an open, flexible platform emphasizing sharing, communication, and workflow. This development direction is consistent with the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485057/ https://www.ncbi.nlm.nih.gov/pubmed/37679394 http://dx.doi.org/10.1038/s41597-023-02470-y |
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author | Liu, Xiaojuan Yu, Zhi Xiang, Nong |
author_facet | Liu, Xiaojuan Yu, Zhi Xiang, Nong |
author_sort | Liu, Xiaojuan |
collection | PubMed |
description | Over the decades, the integrated modeling (IM) environment for magnetically confined fusion has evolved from a single, isolated, proprietary numerical computing software to an open, flexible platform emphasizing sharing, communication, and workflow. This development direction is consistent with the FAIR4RS principles put forward by the scientific community in recent years. In this article, we describe how the FAIR4RS principles were put into practice during the development of the IM management tool FyDev for the Experimental Advanced Superconducting Tokamak (EAST). FyDev integrates the process of building, deploying, and invoking research software, automating the entire process. FyDev can also assign a unique ID for each software, convert the software ID to a Python module, and encapsulate a package management tool to enhance the software building process, ensuring consistency throughout the entire phase of the research software find, access, use, and invocation in a uniform contextual environment. |
format | Online Article Text |
id | pubmed-10485057 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104850572023-09-09 Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion Liu, Xiaojuan Yu, Zhi Xiang, Nong Sci Data Article Over the decades, the integrated modeling (IM) environment for magnetically confined fusion has evolved from a single, isolated, proprietary numerical computing software to an open, flexible platform emphasizing sharing, communication, and workflow. This development direction is consistent with the FAIR4RS principles put forward by the scientific community in recent years. In this article, we describe how the FAIR4RS principles were put into practice during the development of the IM management tool FyDev for the Experimental Advanced Superconducting Tokamak (EAST). FyDev integrates the process of building, deploying, and invoking research software, automating the entire process. FyDev can also assign a unique ID for each software, convert the software ID to a Python module, and encapsulate a package management tool to enhance the software building process, ensuring consistency throughout the entire phase of the research software find, access, use, and invocation in a uniform contextual environment. Nature Publishing Group UK 2023-09-07 /pmc/articles/PMC10485057/ /pubmed/37679394 http://dx.doi.org/10.1038/s41597-023-02470-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Liu, Xiaojuan Yu, Zhi Xiang, Nong Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title | Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title_full | Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title_fullStr | Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title_full_unstemmed | Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title_short | Applying FAIR4RS principles to develop an integrated modeling environment for the magnetic confinement fusion |
title_sort | applying fair4rs principles to develop an integrated modeling environment for the magnetic confinement fusion |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485057/ https://www.ncbi.nlm.nih.gov/pubmed/37679394 http://dx.doi.org/10.1038/s41597-023-02470-y |
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