Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards

In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet...

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Detalles Bibliográficos
Autores principales: Orfanidou, Chrysoula G., Katsiani, Asimina, Candresse, Thierry, Marais, Armelle, Gkremotsi, Theodora, Drogoudi, Pavlina, Kazantzis, Konstantinos, Katis, Nikolaos I., Maliogka, Varvara I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2023
Materias:
Brief Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485082/
https://www.ncbi.nlm.nih.gov/pubmed/37676309
http://dx.doi.org/10.1007/s00705-023-05875-7
Descripción
Sumario:In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet cherry accession imported into the USA from the Republic of Georgia. The complete genome sequences of seven CLV-1 isolates were determined, and phylogenetic analysis indicated that they belonged to a separate clade from the previously characterized Georgian isolate. A small-scale survey confirmed the presence of CLV-1 in 47 out of 151 sweet cherry samples tested, and partial sequencing of 15 isolates showed a high degree of nucleotide sequence similarity among them. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-023-05875-7.

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