Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards

In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet...

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Autores principales: Orfanidou, Chrysoula G., Katsiani, Asimina, Candresse, Thierry, Marais, Armelle, Gkremotsi, Theodora, Drogoudi, Pavlina, Kazantzis, Konstantinos, Katis, Nikolaos I., Maliogka, Varvara I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2023
Materias:
Brief Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485082/
https://www.ncbi.nlm.nih.gov/pubmed/37676309
http://dx.doi.org/10.1007/s00705-023-05875-7
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author Orfanidou, Chrysoula G.
Katsiani, Asimina
Candresse, Thierry
Marais, Armelle
Gkremotsi, Theodora
Drogoudi, Pavlina
Kazantzis, Konstantinos
Katis, Nikolaos I.
Maliogka, Varvara I.
author_facet Orfanidou, Chrysoula G.
Katsiani, Asimina
Candresse, Thierry
Marais, Armelle
Gkremotsi, Theodora
Drogoudi, Pavlina
Kazantzis, Konstantinos
Katis, Nikolaos I.
Maliogka, Varvara I.
author_sort Orfanidou, Chrysoula G.
collection PubMed
description In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet cherry accession imported into the USA from the Republic of Georgia. The complete genome sequences of seven CLV-1 isolates were determined, and phylogenetic analysis indicated that they belonged to a separate clade from the previously characterized Georgian isolate. A small-scale survey confirmed the presence of CLV-1 in 47 out of 151 sweet cherry samples tested, and partial sequencing of 15 isolates showed a high degree of nucleotide sequence similarity among them. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-023-05875-7.
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spelling pubmed-104850822023-09-09 Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards Orfanidou, Chrysoula G. Katsiani, Asimina Candresse, Thierry Marais, Armelle Gkremotsi, Theodora Drogoudi, Pavlina Kazantzis, Konstantinos Katis, Nikolaos I. Maliogka, Varvara I. Arch Virol Brief Report In this study, samples collected from eight sweet cherry trees in northern Greece were analyzed by high-throughput sequencing for the presence of viruses. Bioinformatic analysis revealed the presence of divergent isolates of cherry latent virus 1 (CLV-1), a recently identified trichovirus in a sweet cherry accession imported into the USA from the Republic of Georgia. The complete genome sequences of seven CLV-1 isolates were determined, and phylogenetic analysis indicated that they belonged to a separate clade from the previously characterized Georgian isolate. A small-scale survey confirmed the presence of CLV-1 in 47 out of 151 sweet cherry samples tested, and partial sequencing of 15 isolates showed a high degree of nucleotide sequence similarity among them. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-023-05875-7. Springer Vienna 2023-09-07 2023 /pmc/articles/PMC10485082/ /pubmed/37676309 http://dx.doi.org/10.1007/s00705-023-05875-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Brief Report
Orfanidou, Chrysoula G.
Katsiani, Asimina
Candresse, Thierry
Marais, Armelle
Gkremotsi, Theodora
Drogoudi, Pavlina
Kazantzis, Konstantinos
Katis, Nikolaos I.
Maliogka, Varvara I.
Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title_full Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title_fullStr Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title_full_unstemmed Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title_short Identification of divergent isolates of cherry latent virus 1 in Greek sweet cherry orchards
title_sort identification of divergent isolates of cherry latent virus 1 in greek sweet cherry orchards
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10485082/
https://www.ncbi.nlm.nih.gov/pubmed/37676309
http://dx.doi.org/10.1007/s00705-023-05875-7
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